Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0207.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    77   8e-15
AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical ...    32   0.24 
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p...    28   3.9  
AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 77.0 bits (181), Expect = 8e-15
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
 Frame = -2

Query: 373 MTEFRKNANRLKLCXXXXXXXXXXXXXXXXHDR--QV*HGPNRLPQIDEKTKVRISKTXX 200
           MT+ RK+ANR+                     +   V  G  R   +D+KT+ R+S+   
Sbjct: 377 MTDLRKSANRMNFGELGEDVMQEHMGFDIGQVKTGNVTGGRIRTAAVDQKTRARMSQKMM 436

Query: 199 XXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGF 20
                    GG TSIR +++GTASSV FTP+QGLEI+NP A E +     + YFS++  F
Sbjct: 437 RQMERQKAAGGMTSIRSKMAGTASSVTFTPIQGLEIINPAAQEQQQCSSTSNYFSSSGSF 496

Query: 19  LSVGK 5
           +++ +
Sbjct: 497 VNIDR 501


>AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical
           protein K09F6.9 protein.
          Length = 609

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -1

Query: 536 DGHIGRHFGKH--RKETR*XTGTPXGEVRETPTEADRTKQXEESRQTCQEDEGALRYDRV 363
           D HI RH       KE R        E RE  T+ DR+   E  RQ     E   +  R 
Sbjct: 233 DAHIARHKQAEALEKEKREQEEKMKKEDRERATQKDRSDHIERHRQAEARAEALEKEKRE 292

Query: 362 QEERQ 348
           QEE+Q
Sbjct: 293 QEEKQ 297


>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
           protein F26E4.10 protein.
          Length = 1086

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 458 RETPTEADRTKQXEESRQTCQEDEGALRYDRVQ--EERQPT*TLLTSKMTRTK 306
           R+ P EAD+T + ++ +QTC       +  R++  EE++   TLL   + R K
Sbjct: 200 RQAP-EADKTGEVKDEKQTCNRRNQQRKAKRLRNFEEKERQITLLKKGIDRKK 251


>AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical
           protein C35E7.5b protein.
          Length = 954

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -2

Query: 154 RRQVSGTASSVAFTPL-----QGLEIVNPQAAETRTNEGNAKYFSNTSGFLS 14
           R  ++   S +A TPL     +G E+++ Q       +GN +YF N  G +S
Sbjct: 159 RHYLNQQISKLAGTPLPYQDRKGKELISLQVTWLNKEQGNMEYFVNPDGNIS 210


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
           protein C35E7.5a protein.
          Length = 1262

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -2

Query: 154 RRQVSGTASSVAFTPL-----QGLEIVNPQAAETRTNEGNAKYFSNTSGFLS 14
           R  ++   S +A TPL     +G E+++ Q       +GN +YF N  G +S
Sbjct: 159 RHYLNQQISKLAGTPLPYQDRKGKELISLQVTWLNKEQGNMEYFVNPDGNIS 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,319,355
Number of Sequences: 27780
Number of extensions: 170302
Number of successful extensions: 449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)