Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0207.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    48   3e-06
At1g77180.1 68414.m08991 chromatin protein family contains Pfam ...    28   3.6  
At3g57910.1 68416.m06455 D111/G-patch domain-containing protein ...    28   4.7  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    27   6.2  
At2g14830.1 68415.m01680 expressed protein contains Pfam profile...    27   6.2  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 38/125 (30%), Positives = 54/125 (43%)
 Frame = -2

Query: 379 YAMTEFRKNANRLKLCXXXXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXX 200
           Y +T+ RK ANR+                      Q   G NRL      +K++I+    
Sbjct: 367 YQVTDMRKLANRMAFGTPEESSLGDGLGEGYGMLGQA--GSNRLRVSSVPSKLKINAKVA 424

Query: 199 XXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGF 20
                    GGAT+     SG  SS+AFTP+QG+E+ NPQ A    +   + YFS +  F
Sbjct: 425 KKLKERQYAGGATT-----SGLTSSLAFTPVQGIELCNPQQALGLGSGTQSTYFSESGTF 479

Query: 19  LSVGK 5
             + K
Sbjct: 480 SKLKK 484


>At1g77180.1 68414.m08991 chromatin protein family contains Pfam
           domain, PF02731: SKIP/SNW domain found in chromatin
           proteins.
          Length = 613

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -1

Query: 473 PXGEVRETPTEADRTKQXEESRQTCQEDEGALRYDRVQEERQ 348
           P G+      +  R ++ EE ++T +E E  ++ ++++EER+
Sbjct: 367 PRGDYDNYDQDRGREREREEPQETREEREKRIQREKIREERR 408


>At3g57910.1 68416.m06455 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 265

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -1

Query: 254 PTTANRRENEG-PHQQDIAKELTETTAVRRCYQY*KTSIWYCVFCGLHAST 105
           P   N  + +G P +++  +E      ++      +   WYC+FCG    T
Sbjct: 199 PEKKNEEDEDGKPDEEEEEEEEITEEDLQEILMKLRAEHWYCLFCGFQYET 249


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
            binding domain-containing protein contains Pfam profiles
            PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
            binding domain
          Length = 2176

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 482  TGTPXGEVRETPTEADRTKQXEESRQTCQEDEGA 381
            T +P     E PT  D + Q  +  Q CQ+D  A
Sbjct: 1570 THSPNSNAVELPTAHDASSQASQELQACQQDLSA 1603


>At2g14830.1 68415.m01680 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 454

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 452 TPTEADRTKQXEESRQTCQEDEGALRYDRVQEER 351
           T T+AD  +  E+ R+ C E++  +  + V+E++
Sbjct: 302 TLTDADIEENQEQERKVCDEEDDCIEEEVVEEDQ 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,755,387
Number of Sequences: 28952
Number of extensions: 157689
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)