Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0205.Seq
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   2.2  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   3.9  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    24   6.8  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.0  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 258  FATLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 157
            +  L + IVT + + RLLE+L  D  S  Q S C
Sbjct: 1786 YEELTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 46  HDSVRPPFNGQLRTGTDKGN 105
           HD V+  F GQ+    DKGN
Sbjct: 61  HDGVKIEFIGQIENTYDKGN 80


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 282 SIN*MPRLFATLKRVIVTPAVYPRLLEFLHV 190
           SI  +  +   LK +++ P +YP +   LH+
Sbjct: 373 SIGGLEDIILQLKEMVMLPLLYPEVFLHLHI 403


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 210 LLEFLHVDIQSTGQKSHCVNTREGHRNALF*LDSRIP 100
           +L F  V + +  +  H V+ R+G    +  L +RIP
Sbjct: 208 ILHFSFVTVDAIPESPHLVSNRKGPEGVVERLYNRIP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,243,545
Number of Sequences: 5004
Number of extensions: 20580
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)