Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0205.Seq
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    28   2.0  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    28   2.0  
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    27   2.7  
03_05_0377 + 23613181-23613342,23614469-23614501,23614606-236148...    26   6.2  
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302...    26   8.3  
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523...    26   8.3  

>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 54  CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 182
           C T   RS  N H   +  CL+  +H     G   NVI  +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 54  CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 182
           CT++ +R A  W G G    L    HC  P       V+S +CS
Sbjct: 26  CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69


>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 117 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRP 13
           LD+ IP+ R   E + E R   I+P  +   P+ P
Sbjct: 274 LDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308


>03_05_0377 +
           23613181-23613342,23614469-23614501,23614606-23614879,
           23615105-23615585,23616174-23616846
          Length = 540

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 148 PRGPSQCFVLIRQSDSPCPC 89
           P G S CF    Q  SPCPC
Sbjct: 246 PCGVSFCFNCAGQVHSPCPC 265


>03_05_0379 +
           23628200-23628366,23629074-23629133,23630177-23630209,
           23630253-23630665,23631522-23632008,23632623-23633334
          Length = 623

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 148 PRGPSQCFVLIRQSDSPCPC 89
           P G S CF     + SPCPC
Sbjct: 316 PCGASFCFGCAAPAHSPCPC 335


>02_05_0042 +
           25351648-25351724,25351983-25352010,25352311-25352373,
           25352880-25352945,25353029-25353076,25353338-25353379,
           25353499-25353714,25354066-25354188,25354352-25354564,
           25354930-25355016,25355259-25355507,25356386-25356507,
           25357135-25357225,25358467-25358882,25359489-25359609
          Length = 653

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 264 RLFATLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHR 133
           R FA   ++ V   +  RL++F+ VD+     +   V+ R+G R
Sbjct: 26  RFFAWHIQIEVDHMLSERLMQFIDVDLHGVKAREKFVSVRKGTR 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,670,193
Number of Sequences: 37544
Number of extensions: 151847
Number of successful extensions: 307
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)