Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0205.Seq
(329 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 63 5e-11
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 4e-06
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 5e-05
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 6e-04
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 0.92
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 27 4.9
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 27 4.9
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 26 8.5
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 63.3 bits (147), Expect = 5e-11
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -2
Query: 187 HSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPCQF 83
++EHWAEITLRQH PSQCFVLI+QSDSP CQF
Sbjct: 48 NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 4e-06
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +1
Query: 175 SALNVNVKKFKQARVNGGSNYDSL 246
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +1
Query: 178 ALNVNVKKFKQARVNGGSNYDSL 246
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +1
Query: 172 PSALNVNVKKFKQARVNGGSNYDS 243
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.1 bits (62), Expect = 0.92
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 102 ESDCLIKTKHCDGPRGC*RNVISAQCSE 185
E DC+ +KHCDG C C E
Sbjct: 73 EGDCIPLSKHCDGTWDCQHGTDEMDCQE 100
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Frame = +3
Query: 111 CLIKTKHCDGPRGC*RNVISAQCSE----CQREEIQASAGK 221
C++ CDG R C N C C+ E Q S G+
Sbjct: 563 CILSRWRCDGDRDCADNSDEINCPNSSQYCKSSEYQCSTGE 603
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 252 TLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 127
TL V P + P L+ F+H +I ++ + VN GH+ +
Sbjct: 20 TLPAVFKAP-IRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTS 60
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 99 GESDCLIKTKHCDGPRGC*RNV 164
G DCL K H +G RGC R +
Sbjct: 299 GSLDCLKKVFHSEGLRGCFRGM 320
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Frame = +3
Query: 111 CLIKTKHCDGPRGC*RNVISAQCSE----CQREEIQASAGK 221
C++ CDG R C N C C+ E Q S G+
Sbjct: 718 CILSRWRCDGDRDCADNSDEINCPNSSQYCKSSEYQCSTGE 758
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 87 WHGQGESDCLIKTKHCDGPRGC 152
WH G S C+ ++ CDG C
Sbjct: 132 WHCIGTSRCIPLSRVCDGTNDC 153
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 5 SPXGRVGFVSCAIGTILYDRRSTV 76
SP G+ GFV A G+ L+D S V
Sbjct: 562 SPGGQTGFVRYATGSPLHDSSSIV 585
>SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 313 WESSVNPFMRVNKLDAEAIC-YLKESHS 233
W + N +R+N L E IC +L E HS
Sbjct: 301 WRGNFNAGIRLNSLKFEQICSWLGEKHS 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,961,930
Number of Sequences: 59808
Number of extensions: 175912
Number of successful extensions: 449
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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