Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0205.Seq
         (329 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110451-1|AAI10452.1| 1042|Homo sapiens corin, serine peptidase...    29   3.5  
AF133845-1|AAD31850.1| 1042|Homo sapiens corin protein.                29   3.5  
BC126405-1|AAI26406.1| 1613|Homo sapiens low density lipoprotein...    29   4.6  
BC117136-1|AAI17137.1| 1613|Homo sapiens low density lipoprotein...    29   4.6  
AF074264-1|AAC33006.1| 1613|Homo sapiens LDL receptor-related pr...    29   4.6  
AB209683-1|BAD92920.1| 1477|Homo sapiens low density lipoprotein...    29   4.6  
M12140-1|AAA88026.1|  163|Homo sapiens protein ( Human endogenou...    28   8.0  
BC032109-1|AAH32109.1|  859|Homo sapiens low density lipoprotein...    28   8.0  
AL603749-3|CAH70437.1|  475|Homo sapiens PRAME family member 20 ...    28   8.0  
AL365443-1|CAH71444.1|  475|Homo sapiens PRAME family member 21 ...    28   8.0  
AF166350-1|AAD44360.1|  859|Homo sapiens ST7 protein protein.          28   8.0  
AB208957-1|BAD92194.1|  793|Homo sapiens suppression of tumorige...    28   8.0  

>BC110451-1|AAI10452.1| 1042|Homo sapiens corin, serine peptidase
           protein.
          Length = 1042

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 87  WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQAS 212
           W       CL  T  CDG   C   +    CS CQ +E++ +
Sbjct: 622 WECPSNKQCLKHTVICDGFPDCPDYMDEKNCSFCQDDELECA 663


>AF133845-1|AAD31850.1| 1042|Homo sapiens corin protein.
          Length = 1042

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 87  WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQAS 212
           W       CL  T  CDG   C   +    CS CQ +E++ +
Sbjct: 622 WECPSNKQCLKHTVICDGFPDCPDYMDEKNCSFCQDDELECA 663


>BC126405-1|AAI26406.1| 1613|Homo sapiens low density lipoprotein
            receptor-related protein 6 protein.
          Length = 1613

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 99   GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGK 221
            GE DC+     CDG   C  +     C  C   + Q ++G+
Sbjct: 1259 GEIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQCASGQ 1299


>BC117136-1|AAI17137.1| 1613|Homo sapiens low density lipoprotein
            receptor-related protein 6 protein.
          Length = 1613

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 99   GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGK 221
            GE DC+     CDG   C  +     C  C   + Q ++G+
Sbjct: 1259 GEIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQCASGQ 1299


>AF074264-1|AAC33006.1| 1613|Homo sapiens LDL receptor-related protein
            6 protein.
          Length = 1613

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 99   GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGK 221
            GE DC+     CDG   C  +     C  C   + Q ++G+
Sbjct: 1259 GEIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQCASGQ 1299


>AB209683-1|BAD92920.1| 1477|Homo sapiens low density lipoprotein
            receptor-related protein 6 variant protein.
          Length = 1477

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 99   GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGK 221
            GE DC+     CDG   C  +     C  C   + Q ++G+
Sbjct: 1123 GEIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQCASGQ 1163


>M12140-1|AAA88026.1|  163|Homo sapiens protein ( Human endogenous
           retrovirus ERV3, pol-env-3'LTR region. ).
          Length = 163

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 236 MTLFKVANSLGI*FIDAHEWINRRFPLSL 322
           +TL +   +LGI     H W+  R P+SL
Sbjct: 29  LTLRRQMQALGIAMXSVHGWVQERMPISL 57


>BC032109-1|AAH32109.1|  859|Homo sapiens low density
           lipoprotein-related protein 12 protein.
          Length = 859

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 99  GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQAS 212
           G   C  + + CDG   C        C+ CQ+EE   S
Sbjct: 384 GNWGCYTEQQRCDGYWHCPNGRDETNCTMCQKEEFPCS 421


>AL603749-3|CAH70437.1|  475|Homo sapiens PRAME family member 20
           protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 56  YDRRSTVSSELARTRGIRLSN*NKALRWPSRVLTQCDFCP 175
           YD R  V        G  L    +ALR P R+L   D+CP
Sbjct: 419 YDVRGIVCRSRFAQLGAELMGRVRALREPERILFCTDYCP 458


>AL365443-1|CAH71444.1|  475|Homo sapiens PRAME family member 21
           protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 56  YDRRSTVSSELARTRGIRLSN*NKALRWPSRVLTQCDFCP 175
           YD R  V        G  L    +ALR P R+L   D+CP
Sbjct: 419 YDVRGIVCRSRFAQLGAELMGRVRALREPERILFCTDYCP 458


>AF166350-1|AAD44360.1|  859|Homo sapiens ST7 protein protein.
          Length = 859

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 99  GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQAS 212
           G   C  + + CDG   C        C+ CQ+EE   S
Sbjct: 384 GNWGCYTEQQRCDGYWHCPNGRDETNCTMCQKEEFPCS 421


>AB208957-1|BAD92194.1|  793|Homo sapiens suppression of
           tumorigenicity variant protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 99  GESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQAS 212
           G   C  + + CDG   C        C+ CQ+EE   S
Sbjct: 318 GNWGCYTEQQRCDGYWHCPNGRDETNCTMCQKEEFPCS 355


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,428,332
Number of Sequences: 237096
Number of extensions: 762585
Number of successful extensions: 1516
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)