Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0205.Seq
(329 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 0.60
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 0.60
U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile (un... 27 3.2
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 27 3.2
AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical ... 27 3.2
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 26 5.5
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 26 5.5
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 26 7.3
AL117193-10|CAB60304.1| 337|Caenorhabditis elegans Hypothetical... 25 9.7
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 0.60
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 87 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 218
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 0.60
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 87 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 218
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile
(unfertilizable) protein1 protein.
Length = 551
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 78 AQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGKR 224
A+N + + CL ++ CDG C C +C I+ +A K+
Sbjct: 422 AKNTQFKCDHKCLDSSRRCDGVWDCEDKSDEKGCDKCPSGTIKCAADKK 470
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 123 TKHCDGPRGC*RNVISAQCSECQ 191
+K CDG R C C ECQ
Sbjct: 141 SKRCDGRRDCEDGSDEENCKECQ 163
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +3
Query: 102 ESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGKR 224
++ CL ++ CDG C C +C + SA K+
Sbjct: 428 DNKCLESSRRCDGVWDCEDKSDEKGCDKCPSRSFKCSADKK 468
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +3
Query: 99 GESDCLI-KTKHCDGPRGC*RNVISAQCSECQ 191
G D +I +K CDG + C C ECQ
Sbjct: 132 GSIDMIIPSSKRCDGLKDCSDGSDEENCKECQ 163
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 99 GESDCLIKTKHCDGPRGC*RNVISAQCSECQR 194
G CL + CDG C + C++CQ+
Sbjct: 225 GSDACLPISVKCDGVSDCENESDESNCNKCQK 256
>AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3b protein.
Length = 525
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 13 RSCRFRFVRDRHDSVRPPFNGQLRTGTDKGN 105
++ R +F + H + PP G++R D GN
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGN 441
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +3
Query: 102 ESDCLIKTKHCDGPRGC*RNVISAQCSE---CQREEIQASAG 218
++ C+IK+K C+G + C C C +E + G
Sbjct: 1022 KTKCIIKSKRCNGVQECDNGADEEDCPRSKLCDPDEFRCGTG 1063
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +3
Query: 87 WHGQGESDCLIKTKHCDGPRGC*RNVISA-QC---SECQREEIQASAGK 221
++G S C+ K +CDG C C EC E+ Q ++GK
Sbjct: 956 FNGTAISKCIPKEFYCDGEDDCPEGQDEPDSCFGIGECTHEQFQCTSGK 1004
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 249 LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 127
L V TP + P L+ F+ ++ +++H VNT+ G +++
Sbjct: 23 LPAVFRTP-IRPDLVSFIADQVRRNRRQAHAVNTKAGKQHS 62
>AL117193-10|CAB60304.1| 337|Caenorhabditis elegans Hypothetical
protein Y105C5A.17 protein.
Length = 337
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +3
Query: 57 TTAVQRSAQNWHGQGESDCLIK--TKHCDGPRGC 152
T S + WHG G +DC K+ DG C
Sbjct: 187 TKGRDNSNEEWHGCGTTDCTSAGCKKNADGSNVC 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,111,647
Number of Sequences: 27780
Number of extensions: 122576
Number of successful extensions: 273
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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