Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0205.Seq
         (329 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   1.00 
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   1.00 
At5g62440.1 68418.m07837 expressed protein                             27   4.0  
At3g61570.1 68416.m06896 intracellular protein transport protein...    27   4.0  
At3g29320.1 68416.m03682 glucan phosphorylase, putative similar ...    26   7.0  
At2g38570.1 68415.m04738 expressed protein ; expression supporte...    26   7.0  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 237 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 127
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 237 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 127
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At5g62440.1 68418.m07837 expressed protein
          Length = 202

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 160 LRQHPRGPSQCFVLIRQSDS 101
           +R HP   S+CF L+R+ D+
Sbjct: 129 VRTHPMWKSRCFFLVREDDT 148


>At3g61570.1 68416.m06896 intracellular protein transport protein
           USO1-related contains weak similarity to intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]
          Length = 712

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
 Frame = -3

Query: 213 RLLEFLHVDIQSTGQKSHCVNTREGH----RNALF*LDSRIPLVRASSELTVER----RS 58
           +LLE  H+ ++ TGQ+SH +     H      AL   ++ + L R+  E  +E      +
Sbjct: 253 KLLEIKHLQMKLTGQESHAIGPGMEHLKEVNKALEKENNELKLKRSELEAALEESRKLTN 312

Query: 57  YRIVPIAHETKPTRPXGL 4
            ++ P A E+    P  L
Sbjct: 313 SKVFPDATESLTRHPSTL 330


>At3g29320.1 68416.m03682 glucan phosphorylase, putative similar to
           alpha-glucan phosphorylase, L isozyme 1 precursor
           GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4),
           691-695 (1989))
          Length = 962

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 166 FLPSALNVNVKKFKQARVNGGSNYDSL*GS 255
           F+P      VKKF  + V G ++YD L GS
Sbjct: 858 FVPDPTFEEVKKFVGSGVFGSNSYDELIGS 887


>At2g38570.1 68415.m04738 expressed protein ; expression supported
           by MPSS
          Length = 302

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 119 N*TVGFPLSVPVLS*PLNGGRTESCRSRTKRNRHDL 12
           N +  F  S+PVL+  L    +E+CR R KR +H +
Sbjct: 3   NCSSSFFCSLPVLNARLVKPNSETCRWRLKRIQHSI 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,685,585
Number of Sequences: 28952
Number of extensions: 113245
Number of successful extensions: 253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)