Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0204.Seq
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0499 - 3738959-3740068                                           28   2.7  
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508...    27   6.2  
03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99...    27   6.2  
01_03_0281 - 14570635-14574633                                         27   8.2  

>07_01_0499 - 3738959-3740068
          Length = 369

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 321 FPGVIIQA*TDFYTSLVKEKYALLRKHI 238
           FPG + +     YT   K+KYALL+K++
Sbjct: 125 FPGTVHRPSAPAYTLTRKQKYALLKKNV 152


>04_01_0383 +
           5085697-5085724,5085816-5085927,5087249-5087285,
           5087512-5087581,5087704-5087808,5088022-5088172,
           5088257-5088339,5089152-5089372,5089465-5089501,
           5089668-5089753
          Length = 309

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 305 FRREQTFTQAWSRKNMPCFE 246
           F   Q F  +WS K +PCFE
Sbjct: 224 FEISQRFEGSWSMKALPCFE 243


>03_01_0128 +
           995103-995174,996500-996606,996909-997041,997127-997270,
           997589-997747,997865-997938,998024-998099,998476-998531,
           998651-998738,998824-998964,999057-999206,999320-999476,
           1001183-1001773,1002673-1003532
          Length = 935

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 259 CLASKTYSIFLTISVRISVFNTTKHDLE 176
           CLA++   + ++IS  + +FN  KH  E
Sbjct: 710 CLANRPKEVSVSISFALDIFNAQKHAAE 737


>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 23  LSRQHNYIFFLPGTKPGLFMYAD 91
           ++  HNYI FLP T   LF+ +D
Sbjct: 508 IAEGHNYIEFLPNTVRHLFLCSD 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,379
Number of Sequences: 37544
Number of extensions: 177193
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)