Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0203.Seq
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    28   0.88 
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    27   2.0  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   2.7  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   3.5  
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.2  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    25   6.2  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   6.2  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 15  TLMQAQTWQDPVHLAVAALMDTVP--TVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALM 188
           +++ AQ   +P    + AL D +   T+ + + HPP+    L     L   + P ++  +
Sbjct: 602 SILLAQVKLNPTQAELEALADNIDIVTIFLSLVHPPSPAGELHPIVRLFQDIWPILSRTL 661

Query: 189 DTVPTVVM 212
           DT   V++
Sbjct: 662 DTFSDVLI 669


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 433 RDGSVLATGSSSNTDASTTEESTTFP 510
           +DGS+LAT +SS++   T   S T P
Sbjct: 435 KDGSILATANSSSSRRQTIMFSATLP 460


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 15  TLMQAQTWQDPVHLAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQD 158
           T+  +Q+  +  HLA+A+ +      V+ VY P A+  T   +  L D
Sbjct: 149 TVFASQSNVEAAHLALASTLAAKAAPVIHVYEPDAIVTTTDPSLPLLD 196


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 469 YWNCQWPIHFHHDCLSYIHKCCYR 398
           Y NC WP+ +  D +   ++C YR
Sbjct: 188 YINCWWPVFYEKDFMDE-YECLYR 210


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -2

Query: 361 QCYWNCPWMIHFHHDCWNCIHKCCYRPMYW---ILQGL 257
           +C+ + P + H HH  W+ I  C     +    ILQGL
Sbjct: 59  RCFLHNPKISHQHHSFWSLIEGCLEALQFGLLAILQGL 96


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 66   ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHP 170
            A+    P  V E YHPP    T  +   +Q P HP
Sbjct: 922  AIASPPPPKVGETYHPPTASGT--RVPPVQQPSHP 954


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 138  QAQTLQDPVHPAVAALMDTVPTVVMEVYHP 227
            QA  +   V PAV+A + T P VV  V HP
Sbjct: 1284 QASAVSSNV-PAVSASISTPPAVVPTVQHP 1312


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 377 LQDPVHPAVAALMDIAQAIVMEV 445
           L D VHPA   L+DIA+A   EV
Sbjct: 72  LLDIVHPAAKTLVDIARAQDAEV 94


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 257 QTLQDPVHRAVAALMDTVPTVVMEVYHPRAVPVTLMQA 370
           +T +DPV +    L D VP  V +   PR    T + A
Sbjct: 34  ETSKDPVTQQECTLEDLVPVKVPDFVRPRPPSATSLPA 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,184
Number of Sequences: 5004
Number of extensions: 42078
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)