Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0203.Seq
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 29 2.7
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666... 29 2.7
07_03_1199 + 24752111-24752332 29 3.6
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819 29 3.6
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 28 4.8
06_01_1138 - 9429447-9433868 28 6.3
02_03_0385 + 18396109-18396294,18396344-18396379 27 8.4
01_06_0829 - 32270189-32270863 27 8.4
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = -3
Query: 387 GSCKVCACISVTGTARXXXXXXXXXXXXXISAATARCTGSCKVCVASVLLELPVDDTLPS 208
GS + AC S G A I + G C C++ ++P+DD +
Sbjct: 132 GSAGLVACSSAAGAAAAATCHQCRRVANTICCTSCDRRGYCTNCISRWYSDIPIDDVRKA 191
Query: 207 RLSE 196
R+ E
Sbjct: 192 RVQE 195
>02_04_0343 -
22166148-22166318,22166422-22166465,22166563-22166626,
22166729-22167109,22167296-22167475,22167661-22167790,
22167844-22167946,22168060-22168093,22168216-22168300,
22168389-22168453,22168592-22168690,22168960-22169025,
22169200-22169439
Length = 553
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 284 AVAALMDTVPTVVMEVYHPRAVPVTLMQAQTLQDPVHPAVA----ALMDIAQAIVMEVYW 451
A+ A+M V V M Y P +L T DP AVA AL+ I QA++ V W
Sbjct: 414 ALMAVMVAVGMVSMRGYRP-----SLAAGLTGPDPTLKAVALVVFALIGIPQAVLFSVPW 468
Query: 452 PLAVPVT 472
+A VT
Sbjct: 469 AVASEVT 475
>07_03_1199 + 24752111-24752332
Length = 73
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 401 VAALMDIAQAIVMEVYWPLAVPVTLMQAP 487
V A+ +A + + WP PV +M+AP
Sbjct: 8 VGAIASVAVGAAVSLLWPAVAPVVMMKAP 36
>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
Length = 451
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 114 PAVPVTLMQAQTLQD-PVHPAVAALMDTVPTVVME--VYHPPA 233
P+ + TL+D P+ P+ AA DT+P + +HPPA
Sbjct: 22 PSNTTVTLPPLTLRDVPLLPSAAAATDTIPNPISRHPYFHPPA 64
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -2
Query: 331 HFHHDCWNC--IHKCCYRPMYWILQGL 257
HF+ +CWNC CY W LQ L
Sbjct: 769 HFYCECWNCSLYPLLCYLGPTWFLQYL 795
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -1
Query: 209 HDCRNCIHKCCYR---RMYWILQGLCLHQCYWNCRWMIH 102
HDC NCI +Y +G C +C W W++H
Sbjct: 75 HDCSNCIDIYLQHGDPAVYRARRGRC--RCLWWASWLVH 111
>02_03_0385 + 18396109-18396294,18396344-18396379
Length = 73
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 404 AALMDIAQAIVMEVYWPLAVPVTL 475
+ LM +A A+V+ VY PL++PV L
Sbjct: 9 SVLMHVAAALVVLVYIPLSMPVKL 32
>01_06_0829 - 32270189-32270863
Length = 224
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = -1
Query: 146 LCLHQCYWNCRW-MIHFHHHSRNC 78
LC H W C + +H H HSR C
Sbjct: 41 LCGHLFCWPCLYEWLHVHAHSREC 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,858,200
Number of Sequences: 37544
Number of extensions: 314530
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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