Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0203.Seq
         (587 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    26   0.79 
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    23   5.5  

>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 26.2 bits (55), Expect = 0.79
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 122 NCRWMIHFHHHSRNCIHKCCYRQ 54
           NCR     +H SRN   + CY+Q
Sbjct: 151 NCRTAARRNHSSRNTCRRNCYQQ 173



 Score = 23.0 bits (47), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 236 NCRWMIHFHHDCRNCIHKCCYRR 168
           NCR     +H  RN   + CY++
Sbjct: 151 NCRTAARRNHSSRNTCRRNCYQQ 173


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 257 QTLQDPVHRAVAA-LMDTVPTVV---MEVYHPRAVPVTLMQAQTLQDPVHPAVAALMDIA 424
           +T+  PV + V   +   VP  V   ++VY P+  P+ +   Q ++ P++  +  +++  
Sbjct: 164 KTVPVPVFQKVGVPVPHPVPIAVPHYVKVYIPQPYPLQVNVEQPIKIPIYKVIPKVIEKP 223

Query: 425 QAIVMEVYWPLAV 463
               +E  +P+ V
Sbjct: 224 VPYTVEKPYPIEV 236


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,974
Number of Sequences: 2352
Number of extensions: 12046
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56347938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)