Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0203.Seq
         (587 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    33   0.99 
AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    31   2.3  
AJ295938-1|CAC16891.1|  260|Homo sapiens synaptobrevin like prot...    31   3.0  
AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens ...    30   7.0  
AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens ...    30   7.0  
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ...    30   7.0  

>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 32.7 bits (71), Expect = 0.99
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = -1

Query: 254 LHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWILQGLCLHQCYWNCRWMIHFHHHSRNCI 75
           ++ C   C +M   H    + +H   Y  ++      C+H C      M H   H   CI
Sbjct: 139 MYTCIHICVFMCTMHAYVYSYVHMHAYVCVHMYT---CVHMCIHKYTCM-HMCIHMYTCI 194

Query: 74  HKCCYRQMY-----WILPGLCLHQCYWN 6
           H+C +   Y     +I   +C+H C ++
Sbjct: 195 HRCIFIYTYVYICVYIHIYICIHVCVYS 222


>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 484 CLHQCYWNCQWPIHFHHDCLSYIHKCCYRRMY-WIL*GLCLHQCYWNCPWMIHFHHDCWN 308
           C+H C +     I+ H     YIH   Y  +Y +    +C+H C + C     + +    
Sbjct: 66  CIHICIF-----IYTHMHTYMYIHIHAYAYIYVYSYTRICIHICVFICTHAYIYVYSYVQ 120

Query: 307 CIHKCCY 287
           C+H C +
Sbjct: 121 CMHMCIH 127



 Score = 31.1 bits (67), Expect = 3.0
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -1

Query: 218 HFHHDCRNCIHKCCYRRMYWILQGLCLHQCYWNCRWMIHFHHHSRNCIHKCCYRQMYWIL 39
           H H      IH   Y  +Y   + +C+H C + C     + +    C+H C +  MY   
Sbjct: 76  HMHTYMYIHIHAYAYIYVYSYTR-ICIHICVFICTHAYIYVYSYVQCMHMCIH--MY--- 129

Query: 38  PGLCLHQCYWNC 3
              C+H C + C
Sbjct: 130 --TCMHMCIFIC 139


>AJ295938-1|CAC16891.1|  260|Homo sapiens synaptobrevin like protein
           1B protein.
          Length = 260

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 104 HFHHHSRNCIHKC-CYRQMYWI-LPGLC 27
           ++HHH  NC+H   C+  ++WI +  LC
Sbjct: 168 YYHHHRINCVHLYHCFTSLWWIYMAKLC 195


>AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25557 fis, clone JTH02756. ).
          Length = 485

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +3

Query: 57  AVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAV 236
           +V  ++ T+PT++M     P V VT++Q          A A     VP+ V     P  +
Sbjct: 384 SVMLILRTMPTLMMRTEDRPKVAVTMIQTAAAMGVASGAGATAAAPVPSPVAASTRPRRM 443

Query: 237 PVTLMQHRPCRI 272
            V L    P ++
Sbjct: 444 AVKLQLLIPVKL 455


>AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31417 fis, clone NT2NE2000327, weakly similar to
           GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
          Length = 710

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 18  LMQAQTWQDPVHLAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAA-LMDT 194
           L  A T Q  V   +   + + P V      PPAV  T+  A   Q PV    AA   D+
Sbjct: 229 LPNAATAQPAVQHIIHQPIQSRPPVTTSNAIPPAVVATV-SATRAQSPVITTTAAHATDS 287

Query: 195 VPTVVMEVYHPPAVPVTLMQ 254
                + + HPP+  +++ +
Sbjct: 288 ALRPTLSIQHPPSAAISIQR 307


>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
            protein.
          Length = 1362

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 84   PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVP 239
            P V++E   PPA P+T MQ Q     +   V      +P+V ++   PP +P
Sbjct: 909  PQVLLEDEEPPAPPLTSMQMQLYLQQLQ-KVQPPTPLLPSVKVQSQPPPPLP 959


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,967,539
Number of Sequences: 237096
Number of extensions: 1765908
Number of successful extensions: 4124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4103
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)