Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0203.Seq
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    28   5.7  
U70854-7|AAO91722.1|  106|Caenorhabditis elegans Galectin protei...    27   7.5  
U70854-6|AAK68382.1|  232|Caenorhabditis elegans Galectin protei...    27   7.5  
AB038502-1|BAB11967.1|  232|Caenorhabditis elegans galectin LEC-...    27   7.5  

>U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical
          protein R12B2.8 protein.
          Length = 80

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 80 CIHKCCYRQMYWILP 36
          C ++CCYR  YW+ P
Sbjct: 45 CDNECCYRLRYWVYP 59


>U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical
           protein ZC317.7 protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 45  PVHLAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTLQDPV 164
           P+H  +AA+  T    +M V HP P +P+    +Q+ Q P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 159 PVHPAVAALMDTVPTVVMEVYHP-PAVPV 242
           P+HP +AA+  T    +M V HP P +P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPI 231


>U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical
           protein C14C11.2 protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 45  PVHLAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTLQDPV 164
           P+H  +AA+  T    +M V HP P +P+    +Q+ Q P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 159 PVHPAVAALMDTVPTVVMEVYHP-PAVPV 242
           P+HP +AA+  T    +M V HP P +P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPI 231


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 245 CYWNCRWMIHFHHDCRNC 192
           C+W CR  +  HH C NC
Sbjct: 62  CFW-CRCFMDVHHRCPNC 78


>U70854-7|AAO91722.1|  106|Caenorhabditis elegans Galectin protein
           11, isoform b protein.
          Length = 106

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 84  PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAV 236
           P   M V  P  VPV     Q +  P++P+V  ++   PT    +Y  P V
Sbjct: 44  PPPPMIVPQPQIVPVVQQIMQPMVQPIYPSVQPIV--YPTATPIIYTQPEV 92


>U70854-6|AAK68382.1|  232|Caenorhabditis elegans Galectin protein
           11, isoform a protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 84  PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAV 236
           P   M V  P  VPV     Q +  P++P+V  ++   PT    +Y  P V
Sbjct: 170 PPPPMIVPQPQIVPVVQQIMQPMVQPIYPSVQPIV--YPTATPIIYTQPEV 218


>AB038502-1|BAB11967.1|  232|Caenorhabditis elegans galectin LEC-11
           protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 84  PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAV 236
           P   M V  P  VPV     Q +  P++P+V  ++   PT    +Y  P V
Sbjct: 170 PPPPMIVPQPQIVPVVQQIMQPMVQPIYPSVQPIV--YPTATPIIYTQPEV 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,201,197
Number of Sequences: 27780
Number of extensions: 269179
Number of successful extensions: 847
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)