Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0203.Seq
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    27   0.18 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.18 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   6.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   6.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   6.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.0  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 203 CRNCIHKCCYRRMYWILQGLC 141
           CRNCIH   +  ++W+  G C
Sbjct: 35  CRNCIHPTVFSVLFWL--GYC 53



 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 316 CWNCIHKCCYRPMYWILQGLC 254
           C NCIH   +  ++W+  G C
Sbjct: 35  CRNCIHPTVFSVLFWL--GYC 53



 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 86 RNCIHKCCYRQMYWILPGLC 27
          RNCIH   +  ++W+  G C
Sbjct: 36 RNCIHPTVFSVLFWL--GYC 53


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 203 CRNCIHKCCYRRMYWILQGLC 141
           CRNCIH   +  ++W+  G C
Sbjct: 483 CRNCIHPTVFSVLFWL--GYC 501



 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 316 CWNCIHKCCYRPMYWILQGLC 254
           C NCIH   +  ++W+  G C
Sbjct: 483 CRNCIHPTVFSVLFWL--GYC 501



 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 86  RNCIHKCCYRQMYWILPGLC 27
           RNCIH   +  ++W+  G C
Sbjct: 484 RNCIHPTVFSVLFWL--GYC 501


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +3

Query: 3   AVPVTLMQAQTWQDPVHLAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAA 182
           A  +TL++A+T   P HLA  +      T       PP+VPV    A T    + P +AA
Sbjct: 27  AASLTLVKAET---PEHLAGTS------TTAAATPTPPSVPVGSAVAGTAGGALFPGMAA 77


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 580 AEPSVNVTLPSW 545
           AE S  +TLPSW
Sbjct: 183 AEQSYGLTLPSW 194


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 580 AEPSVNVTLPSW 545
           AE S  +TLPSW
Sbjct: 198 AEQSYGLTLPSW 209


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 580 AEPSVNVTLPSW 545
           AE S  +TLPSW
Sbjct: 86  AEQSYGLTLPSW 97


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -1

Query: 104 HFHHHSRNCIHKCCYRQ 54
           H HHH    +    YRQ
Sbjct: 352 HHHHHQTQSLQHLHYRQ 368


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 350 PVTLMQAQTLQDPVHPAVAALMDIAQAIVMEVYWPL 457
           P+T  Q QT+   + P    +  +  A V   Y PL
Sbjct: 165 PLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTPL 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,691
Number of Sequences: 438
Number of extensions: 3263
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)