Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0203.Seq
(587 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 31 0.43
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 30 1.00
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si... 29 1.7
At4g34930.1 68417.m04952 1-phosphatidylinositol phosphodiesteras... 29 3.0
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 3.0
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 3.0
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 28 4.0
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 4.0
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 28 4.0
At3g62160.1 68416.m06984 transferase family protein low similari... 28 5.3
At1g69280.1 68414.m07943 expressed protein 28 5.3
At1g36380.1 68414.m04519 expressed protein similar to vanilloid ... 28 5.3
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 27 7.0
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 27 9.3
At2g29850.1 68415.m03625 hypothetical protein 27 9.3
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 78 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVP 200
T P V Y+PP PV A ++ P P V +D VP
Sbjct: 178 TTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVP 218
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +3
Query: 105 YHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTV-VMEVYHPPAVPVTLMQHRP 263
Y PP +P T ++ T + PV P + P V + PP P T P
Sbjct: 59 YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQPPTYKPPTP 112
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +3
Query: 84 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPV 242
P V Y PP PV + T PV P T P V Y+PP PV
Sbjct: 150 PPVQPPTYKPPTSPV---KPPTTTPPVKPPT-----TTPPVQPPTYNPPTTPV 194
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 30.3 bits (65), Expect = 1.00
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 104 HFHHHSRNCIHKCCYRQMYW 45
HFHH S +C H CY YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 218 HFHHDCRNCIHKCCYRRMYW 159
HFHH +C H CY YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 331 HFHHDCWNCIHKCCYRPMYW 272
HFHH +C H CY YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 168
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 260 SVLHQCYWNCRWMIHFHHDCRNCIHKC 180
S+LH C +CR ++ ++C C HKC
Sbjct: 100 SLLHCCKKHCRNVLGDRNNCGRCGHKC 126
>At4g34930.1 68417.m04952 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase)
(Phosphatidylinositol- specific phospholipase C)
(PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes]
Length = 391
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 75 DTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQ 254
D+ +VV EV +P +++ V+P V+ D+ TVV +V +P +
Sbjct: 17 DSAKSVVEEVVNPTVSFANNSARTVVEEVVNPTVSFANDSARTVVEKVLNPTVSFIDSQL 76
Query: 255 HRP 263
RP
Sbjct: 77 QRP 79
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 66 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 155
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 293 ALMDTVPTVVMEVYHPRAVPVTLMQAQTLQ 382
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 66 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 155
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 293 ALMDTVPTVVMEVYHPRAVPVTLMQAQTLQ 382
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 102 VYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPP 230
+Y PP P + + T P++P T PT +Y PP
Sbjct: 62 IYSPPIYPPPIQKPPTYSPPIYPPPIQKPPT-PTYSPPIYPPP 103
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = +3
Query: 63 AALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPV 242
AA T T + PPA PVT A T P P VA ++ PPA
Sbjct: 50 AAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAP 109
Query: 243 TL 248
T+
Sbjct: 110 TV 111
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 84 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALM--DTVPTVVMEVYHPPAVPV 242
P V VY P PV ++ PV+P A + T P V VY P PV
Sbjct: 118 PPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPV 172
>At3g62160.1 68416.m06984 transferase family protein low similarity
to Taxus cuspidata transferases: 10-deacetylbaccatin
III-10-O-acetyl transferase GI:6746554, taxadienol
acetyl transferase GI:6978038,
2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
transferase GI:11559716; contains Pfam profile PF02458
transferase family
Length = 428
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 275 VHRAVAALMDTVPTVVMEVYHPRAVPVTLMQAQTLQDPVH-PAVAALMDIAQAIVMEVYW 451
V+R + +T P+VV+++ +PV A+T+ H P A + A A + Y+
Sbjct: 8 VNRVLIQACETTPSVVLDLSLIDNIPVLRCFARTIHVFTHGPDAARAIQEALAKALVSYY 67
Query: 452 PLA 460
PL+
Sbjct: 68 PLS 70
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = -2
Query: 499 WILLWCLHQCYWNCQWP-IHFHHDCLSYIHKCCYRRMYWIL*GLCLHQCYWNCPWMIHFH 323
W+ C+ C+ P ++ C + KCC W C + +C W+ H
Sbjct: 302 WLCCKNTGPCFSCCRLPSCGYNFFCCKRL-KCC-PCFSWCRWPSCDYNS--SCGWLFCCH 357
Query: 322 HDCWNCIHKCC 290
CW+C CC
Sbjct: 358 WSCWSCC--CC 366
>At1g36380.1 68414.m04519 expressed protein similar to vanilloid
receptor-like protein GB:AAD26363 from [Homo sapiens]
Length = 84
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 541 LXTISFSACYQGTWWILLWCL 479
L ISF C+ WW L W L
Sbjct: 20 LLAISFVICFIALWWFLAWKL 40
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 99 EVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQHRPC 266
++ HPP VPV + + P P P +E HPP VPV + +PC
Sbjct: 252 KIEHPPPVPVYKPPPKIEKPPPVPVYK------PPPKIE--HPPPVPVHKLPKKPC 299
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Frame = +3
Query: 54 LAVAALMDTVPTVVMEVYHPPAVPV--TLMQAQTLQDPVH------PAVAALMDTVPTVV 209
LA+ ++ V + Y P + PV + TL PV+ P ++ + T PT+
Sbjct: 8 LAICLILSLVTITTADYYSPSSPPVYKSPEHKPTLPSPVYTPPVYKPTLSPPVYTKPTIP 67
Query: 210 MEVYHPP 230
VY PP
Sbjct: 68 PPVYTPP 74
Score = 27.1 bits (57), Expect = 9.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Frame = +3
Query: 78 TVPTVVMEVYHPPAVPVT----LMQAQTLQDPVH------PAVAALMDTVPTVVMEVYHP 227
T PT+ VY PP T + T+ PV+ P ++ + T PT+ VY P
Sbjct: 62 TKPTIPPPVYTPPVYKHTPSPPVYTKPTIPPPVYTPPVYKPTLSPPVYTKPTIPPPVYTP 121
Query: 228 PAVPVTLMQHRP 263
P T + +P
Sbjct: 122 PVYKPTPVYTKP 133
>At2g29850.1 68415.m03625 hypothetical protein
Length = 284
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 305 TVPTVVMEVYHPRAVPVTLMQAQTLQDPVHPAVAALMDIAQAIVMEVY 448
T P V + A P +Q T D +P AAL + ++ E+Y
Sbjct: 120 TDPAYYYPVLYSTAAPAATIQWPTSTDFAYPLAAALQTLPDDMLQELY 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,431,362
Number of Sequences: 28952
Number of extensions: 233130
Number of successful extensions: 672
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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