Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0202.Seq
         (585 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2XKX5 Cluster: Putative uncharacterized protein; n=2; ...    33   5.0  
UniRef50_Q4Y351 Cluster: Putative uncharacterized protein; n=5; ...    33   5.0  
UniRef50_UPI000057C40A Cluster: hypothetical protein MS53_0454; ...    32   8.7  
UniRef50_Q234P4 Cluster: Putative uncharacterized protein; n=3; ...    32   8.7  

>UniRef50_A2XKX5 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 512

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = -2

Query: 392 ILNLFGGEFV*LCISQNAKVGVSTCFSFLLNSTVMCFAHFQAANRFCFSNSFHALNTHKN 213
           I N F   F+  C+  + + G+++ +   +   +  F H  AA   CF   +  LNT + 
Sbjct: 346 ITNKFKRSFMAECMIYDVEAGMNSLWKINIPEDLPWFLHETAAAGLCFL-QYCNLNTLRT 404

Query: 212 MYVLGESLFLSYLI 171
            ++L  SLFL   I
Sbjct: 405 KFILSISLFLGLSI 418


>UniRef50_Q4Y351 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 926

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 314 SFLLNSTVMCFAHFQAANRFCFSNSFHALNTHKNMYVLGESLFLSYLIIVL 162
           SFL  S    +   Q  N++      + LN  KN Y+L ++ FL+Y II++
Sbjct: 734 SFLKESIYFKYIDTQLMNKYIHGTKIYTLN--KNEYLLKDNTFLNYAIIII 782


>UniRef50_UPI000057C40A Cluster: hypothetical protein MS53_0454;
           n=1; Mycoplasma synoviae 53|Rep: hypothetical protein
           MS53_0454 - Mycoplasma synoviae 53
          Length = 208

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -1

Query: 318 FFFFIK*YCHVF-C-SFSSCKSILFFKFLPCTEYT*KYVCS---GRIFIFILFNYCSFFY 154
           FFF++  +C  F C  F  C+S     F  C  ++    CS    R + F  FN+ +F++
Sbjct: 30  FFFYLSSFCRSFSCYFFCCCRSHFSLWFFFCFYFSFSSWCSFFNSRFYSFFSFNFFNFYF 89

Query: 153 LL*TFLMNSC 124
                  +SC
Sbjct: 90  FSSYCFSSSC 99


>UniRef50_Q234P4 Cluster: Putative uncharacterized protein; n=3;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1408

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +3

Query: 387  QNSFNAEMPRSMLW*FLQGRDYDLGQYARKDW*VQ*NNFMIFIHRIIGCYRRINVQELHD 566
            QN+FN E  +S    F Q  ++ L +Y  ++  +Q NN+     ++I   + ++ Q L  
Sbjct: 1177 QNTFNEEQIKSQRINFTQKVEFHLSEYKEENETIQTNNYR---PQMIKTKQFVDSQNLKQ 1233

Query: 567  KLRNQF 584
             L+NQF
Sbjct: 1234 DLKNQF 1239


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,324,832
Number of Sequences: 1657284
Number of extensions: 9268383
Number of successful extensions: 18402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18389
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)