Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0202.Seq
         (585 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.27 
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   1.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -2

Query: 191 LFLSYLIIVLS---FIYSELF**IHVIILI*QFFFCVCVLMFC 72
           LF   LII+L    F Y+ +   +H+++L+  ++F    L+FC
Sbjct: 227 LFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFC 269



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 131 IHVIILI*QFFFCVCVLMFCDLI 63
           +H++ L+   +F V +L +C  I
Sbjct: 68  VHLLFLLCSGYFTVHLLFYCPFI 90


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -2

Query: 158 FIYSELF**IHVIILI*QFFFCVCVLMFCDLIS 60
           F + E F  IH+ + +      + ++M CD+++
Sbjct: 204 FTFEETFAIIHLSVFVYTLVSVILIIMGCDVVA 236


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 366 KFSPKQIQNSFNAE 407
           +F P QI+++FN E
Sbjct: 410 RFEPPQIRHAFNEE 423


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 352 IHNQTNSPPNKFKIAL 399
           +H Q N PP+K  IA+
Sbjct: 634 LHRQFNLPPSKDTIAV 649


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,345
Number of Sequences: 336
Number of extensions: 2856
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)