Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0202.Seq
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        31   0.16 
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    31   0.16 
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   2.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   3.5  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.5  
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    26   4.7  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   4.7  
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    25   6.2  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -1

Query: 321 MFFFFIK*YCHVFCSFSSCKSILF--FKFLPCTEYT*KYVCSGRIFIFILFNYCSFF 157
           MFFF +   C VF  FS C  ++   F FL  T +    +C    F  +L   CS +
Sbjct: 1   MFFFLVFSACEVFVGFSLCTLVISVPFFFLQMTPFY-SILCFLSFFALLLHLPCSIY 56


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 533 ASDYPMNKNHKIILLYSPIFSCILSQVIITALKELP 426
           AS++P++ N  ++L+ SP F C    + +TAL  +P
Sbjct: 499 ASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLSVP 534


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 498 YFIVLTNLFLHIVPSHNHGLEGITRALSGAFLH*SYFEFVWGRICLIMY 352
           YF+++ NL    V     G++GI   L   FL     +F++ RIC+  Y
Sbjct: 519 YFMIICNLIGFAV-----GIDGIKNVLVSFFLTLKGKKFIYFRICITNY 562


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 204  SGRIFIFILFNYCSFFYLL*TFLMNSCNNF 115
            SG    F+LFN  S  Y+L  F+    +N+
Sbjct: 1187 SGNAMFFVLFNLVSMIYILTLFIAIIISNY 1216


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 304 NKKEKHVLTPTLAF*DIHNQTNSPPNKFKIALMQKCPAQCSGNSFK 441
           N+K++H  T   A         S   K K+A ++K P+  +G SFK
Sbjct: 58  NRKKRHTKTYVEALESQLANMESTLAKIKVAPVEKIPSLLAGISFK 103


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 521 PMNKNHKIILLYSPIFSCILSQVIITALKELPEH 420
           P   NH  IL    +  C   QVI+ A K L  H
Sbjct: 63  PHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITH 96


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 554 LHIYPSIASDYPMNKNHKIILLYSPIFSCILSQVIITALKE 432
           + ++ S+   +P   N  I  L  PIF C++  VI +A+ E
Sbjct: 150 ISLFYSLFHAHPFRINTIIPALVLPIFPCMICGVIASAIVE 190


>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 251 FSNSFHALNTHKNMYVLGESLFLSY 177
           +S  FH +N + N YVL +   L+Y
Sbjct: 98  YSQVFHLVNNNGNYYVLNDLFRLNY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,508
Number of Sequences: 5004
Number of extensions: 44687
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)