Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0202.Seq
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0799 + 7035380-7036148,7036587-7037080                           29   2.7  
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069...    28   6.3  
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903...    28   6.3  

>11_01_0799 + 7035380-7036148,7036587-7037080
          Length = 420

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 349 DIHNQTNSPPNKFKIALMQKCPAQCSGNSFKAV 447
           D+H++T+S P+   ++L+QK   +  G S + V
Sbjct: 367 DVHSETDSTPSDCSVSLLQKMGVEMCGLSLEEV 399


>03_06_0766 -
           36106116-36106230,36106598-36106716,36106880-36106960,
           36107062-36107118,36107350-36107373,36107810-36107909,
           36107983-36108053,36108132-36108236,36108674-36108847,
           36109406-36109555,36109701-36109871,36109968-36110024,
           36110107-36110142,36110165-36110357,36110439-36110578,
           36110960-36111166,36111442-36111498,36111711-36111809,
           36112289-36112408,36112865-36113032,36113450-36113510,
           36113611-36113720,36114132-36114263,36114344-36114511,
           36115118-36115182,36115242-36115372,36115450-36115487,
           36116272-36116373,36116480-36116537,36117479-36117580,
           36117695-36117909,36118158-36118307,36118699-36118858,
           36118984-36119042,36119287-36119443,36119536-36119681,
           36121376-36121648,36122889-36122891
          Length = 1457

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -2

Query: 374 GEFV*LCISQNAKVGVSTCFSFLLNSTVMCFAHFQAANRFCFSNSFHALNTHKNMYVLGE 195
           G+FV +    N K+  +   ++LL  + +C       N  CF     A +     Y LGE
Sbjct: 216 GKFVEIQFDDNGKISGAAIRTYLLERSRVCQISDPERNYHCFYMLCAAPSEDCKKYKLGE 275

Query: 194 SLFLSYL 174
           +    YL
Sbjct: 276 AKTFHYL 282


>02_04_0157 +
           20388761-20388763,20389807-20389935,20390206-20390349,
           20390690-20390835,20390915-20391071,20391312-20391370,
           20391466-20391664,20392232-20392381,20392471-20392607,
           20392717-20392863,20392975-20393076,20395655-20395712,
           20395816-20395917,20396236-20396273,20396409-20396535,
           20397092-20397259,20397356-20397487,20400222-20400331,
           20400400-20400460,20400929-20401106,20401194-20401399,
           20401552-20401671,20402523-20402621,20404177-20404386,
           20404704-20404843,20404945-20405053,20405351-20405431,
           20405523-20405693,20405825-20405974,20407029-20407202,
           20407453-20407479,20407688-20407758,20407843-20407942,
           20408305-20408361,20409457-20409513,20409656-20409736,
           20410336-20410421,20410535-20410649
          Length = 1466

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = -2

Query: 374 GEFV*LCISQNAKVGVSTCFSFLLNSTVMCFAHFQAANRFCFSNSFHALNTHKNMYVLGE 195
           G+FV +   Q+ K+  +   ++LL  + +C       N  CF     A    +  Y LG+
Sbjct: 229 GKFVEIQFDQSGKISGAAIRTYLLERSRVCQISDPERNYHCFYMLCSAPAEERERYKLGD 288

Query: 194 SLFLSYL 174
                YL
Sbjct: 289 PASFHYL 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,626
Number of Sequences: 37544
Number of extensions: 222622
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)