Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0202.Seq
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   29   2.1  
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  28   4.9  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
           F I  YC +F   +   + LF  +  C+ +    +   R  +F+++ YCS F L+
Sbjct: 40  FMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVLI 92



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
           F I  YC +F   +   + LF  +  C+ +    +   R  +F+++ YCS F L+
Sbjct: 140 FMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVLI 192



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -1

Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
           F I  YC +F   +   + LF  +  C+ +    +   R  +F+++ YCS F  +
Sbjct: 240 FMIYAYCSLFVFITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVFI 292


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
           F I  YC +F   +   + LF  +  C+ +    +   R  +F+++ YCS F L+
Sbjct: 139 FMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVLI 191


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYL 151
           F I  YC +F   +   + LF  +  C+ +    +   R  +F+++ YCS F L
Sbjct: 239 FMIYAYCSLFVFITIVHACLFMIYAYCSLFVLITIIHAR--LFMIYAYCSLFCL 290



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
           F I  YC +F   +   + LF  +  C+ +    +   R  +F++  YCS F L+
Sbjct: 139 FMIYAYCSLFVLITIVHACLFMIYAFCSLFVLITIVHAR--LFMIHAYCSLFVLI 191



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -1

Query: 312 FFIK*YCHVFCSFSSCKSILFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 148
           F I  YC +F   +   + LF  +  C+ +    +   R  +F+++ YCS F  +
Sbjct: 199 FMIYAYCSLFVLITIIHACLFMIYAFCSLFVLITIVHAR--LFMIYAYCSLFVFI 251


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +1

Query: 298  LFNKKEKHVLTPTLAF*DIHNQTNSPPNKFKIALMQKCP 414
            LFN+ E    +P LA  DI N    PP+K   AL Q CP
Sbjct: 3509 LFNR-EDITTSPLLA--DIKNTKFVPPHKVSEALSQLCP 3544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,421,819
Number of Sequences: 59808
Number of extensions: 291711
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)