Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0202.Seq
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    27   9.8  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    27   9.8  
U49830-9|AAV58880.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U49830-8|AAK31475.1|  439|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 207 CSGRIFIFILFNYCSFFYLL*TFLMNSCNN 118
           CS R  I I+ N+  F Y +   L+N CNN
Sbjct: 74  CSIRCAIIIVNNFFVFMYYIFLVLVNVCNN 103


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform b
           protein.
          Length = 1250

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 269 AANRFCFSNSFHALNTHKNMYVLGES 192
           A++R  FSN  H L +  + Y LG+S
Sbjct: 324 ASSRLIFSNGTHLLESEIDQYALGDS 349


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform a
           protein.
          Length = 2456

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 269 AANRFCFSNSFHALNTHKNMYVLGES 192
           A++R  FSN  H L +  + Y LG+S
Sbjct: 324 ASSRLIFSNGTHLLESEIDQYALGDS 349


>U49830-9|AAV58880.1|  336|Caenorhabditis elegans Hypothetical
           protein C33F10.7b protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -2

Query: 407 FCI----KAILNLFGGEFV*LCISQNAKVGVSTCFSFLLNSTVMCFA 279
           FC+    K I++L+GG     C  +  +  +ST FS   + T +CFA
Sbjct: 40  FCVIHKGKVIVDLWGGYADKECFKEWKEDTISTIFSCTKSVTAICFA 86


>U49830-8|AAK31475.1|  439|Caenorhabditis elegans Hypothetical
           protein C33F10.7a protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -2

Query: 407 FCI----KAILNLFGGEFV*LCISQNAKVGVSTCFSFLLNSTVMCFA 279
           FC+    K I++L+GG     C  +  +  +ST FS   + T +CFA
Sbjct: 65  FCVIHKGKVIVDLWGGYADKECFKEWKEDTISTIFSCTKSVTAICFA 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,194,937
Number of Sequences: 27780
Number of extensions: 252771
Number of successful extensions: 622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)