Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0202.Seq
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19560.1 68416.m02480 F-box family protein contains weak hit ...    32   0.32 
At5g21900.1 68418.m02539 expressed protein                             28   5.3  
At2g26510.1 68415.m03181 xanthine/uracil permease family protein...    28   5.3  

>At3g19560.1 68416.m02480 F-box family protein contains weak hit to
           Pfam PF00646: F-box domain;; contains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain
          Length = 356

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 551 HIYPSIASDYPMNKNHKIILLYSPIFSCI 465
           +IY      Y  +KNHKI+++YSP+F  I
Sbjct: 135 YIYDWYCLGYDKDKNHKILVVYSPMFGRI 163


>At5g21900.1 68418.m02539 expressed protein
          Length = 544

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 404 CIKAILNLFGGEFV*LCISQNAKVGVSTCFS 312
           CI A L + GG    LC+++   VG  T FS
Sbjct: 430 CIAAFLEVSGGSLRELCLNKVRDVGPETAFS 460


>At2g26510.1 68415.m03181 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 551

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 239 FHALNTHKNMYVLGESLFLSYLI 171
           F   N+ +NMYV+G SLFLS  I
Sbjct: 434 FTDTNSMRNMYVIGVSLFLSLSI 456


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,877,373
Number of Sequences: 28952
Number of extensions: 209059
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)