Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0201.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    25   0.25 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   4.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   4.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   4.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   4.0  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   7.1  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   7.1  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   7.1  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    20   9.4  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.25
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 200 PAKPEQPPHPWAPGSRLQVSCY 135
           P +P  PP+P+ PG+   ++ Y
Sbjct: 202 PLQPFPPPYPFYPGTSAMLAAY 223


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 332 NEDPDKEPKRSRSFFPW 282
           +ED D E    R  +PW
Sbjct: 197 DEDDDDEETGDRQIYPW 213


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 332 NEDPDKEPKRSRSFFPW 282
           +ED D E    R  +PW
Sbjct: 197 DEDDDDEETGDRQIYPW 213


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 164 EPTDEEVVQVLLEYRKKFESSICRNTL 244
           EP DE VVQ + E+  K   S+ +  L
Sbjct: 512 EPIDEYVVQQMKEFDGKTLVSVTKEGL 538


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 332 NEDPDKEPKRSRSFFPW 282
           +ED D E    R  +PW
Sbjct: 197 DEDDDDEETGDRQIYPW 213


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 56  QHLEQCRFSSCSAWNTQKLHDSHH 127
           QHL Q +F+       Q LH   H
Sbjct: 112 QHLHQSKFNPHEEVKLQHLHQFPH 135


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 50  LPQHLEQCRFSSCSAWNTQKLHDSHHRTRNS*LAGESREPTDE--EVVQVLLEYRKKFES 223
           L +HL     + CS  +  + + S    R+  L    R+  +E  E      EYRKK+E+
Sbjct: 63  LKRHLPDALHTECSKCSETQKNGSKKIMRH--LIDHKRDWWNELEEKYDKEGEYRKKYEA 120

Query: 224 SI 229
            I
Sbjct: 121 EI 122


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 152 LQVSCYVCGDASHVASGCSMRYKKKN 75
           LQ SC  C       S   +RY  KN
Sbjct: 69  LQTSCSKCSQRQQDGSRTIIRYLIKN 94


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 152 LQVSCYVCGDASHVASGCSMRYKKKN 75
           LQ SC  C       S   +RY  KN
Sbjct: 69  LQTSCSKCSQRQKDGSRTIIRYLIKN 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,379
Number of Sequences: 336
Number of extensions: 2337
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)