Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0201.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712... 34 0.046
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 33 0.080
04_03_0097 + 11166422-11166529,11166647-11167277,11167385-11167533 31 0.32
12_02_0541 + 20162313-20162374,20162670-20163419,20164627-201648... 31 0.57
11_03_0149 + 10787332-10787454,10787776-10788529,10790406-107904... 30 0.75
01_06_1539 + 38107108-38109649,38110563-38110915 30 0.75
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 30 0.75
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 30 0.99
03_05_0126 + 21066911-21067321 29 1.3
03_05_0007 - 19536239-19536532,19536937-19537047,19537126-195376... 29 1.3
04_04_1647 + 35032328-35033803 29 1.7
02_01_0158 - 1103461-1104186 28 3.0
11_01_0439 + 3353516-3353962,3354403-3354483,3354675-3354947,335... 28 4.0
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835... 28 4.0
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 27 5.3
06_03_0046 - 15852653-15854560 27 7.0
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 27 7.0
04_03_0114 + 11417041-11417188,11418325-11418399,11421007-114211... 27 7.0
02_05_1020 - 33561454-33561568,33561839-33562070,33563286-335633... 27 7.0
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 27 9.2
05_03_0402 + 13533055-13533501 27 9.2
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 27 9.2
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 27 9.2
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047... 27 9.2
02_05_0580 - 30117806-30118519 27 9.2
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 27 9.2
02_02_0716 - 13264983-13265195,13265219-13265968,13266307-132664... 27 9.2
>11_06_0152 +
20669949-20670326,20670887-20670997,20671079-20671280,
20671393-20671675,20672145-20672234,20672366-20672473,
20672595-20672975,20673250-20673324,20673685-20673797,
20676233-20676742,20676807-20677300
Length = 914
Score = 34.3 bits (75), Expect = 0.046
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 179 PHPWAPGSRLQVSCYVCGDASHVASGCSMRYKKK 78
P + PG L +C+ CG+ HVA C M +K+
Sbjct: 166 PRYFDPGETLLETCFNCGEEGHVAVNCPMEKRKR 199
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 33.5 bits (73), Expect = 0.080
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKK 78
CY+C + H++SGC +YK K
Sbjct: 120 CYICKRSGHISSGCPSKYKNK 140
>04_03_0097 + 11166422-11166529,11166647-11167277,11167385-11167533
Length = 295
Score = 31.5 bits (68), Expect = 0.32
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -1
Query: 143 SCYVCGDASHVASGCSMRYKKK---NDTAPGA--VAGATRDVNVCSR 18
+C+VCG H+AS C R K T+ A G TRD + C R
Sbjct: 202 TCFVCGQLGHLASKCPQRKGMKTPAGQTSKSANVTIGNTRDGSGCGR 248
>12_02_0541 +
20162313-20162374,20162670-20163419,20164627-20164820,
20165001-20165074,20165094-20165114
Length = 366
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 164 PGSRLQVSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGATR 39
PG++ V C+ CG+ H A+ C + +K GA A R
Sbjct: 287 PGAKKNVDCFNCGEYGHYANNCP--HPRKTPVRTGANAMTIR 326
>11_03_0149 +
10787332-10787454,10787776-10788529,10790406-10790473,
10791254-10791421
Length = 370
Score = 30.3 bits (65), Expect = 0.75
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 167 APGSRLQVSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRDVNV 27
AP L V+C+ CG H ++ C + K+ + A A + N+
Sbjct: 127 APNQSLGVTCFNCGGKGHYSNKCPQKQKQHGVRSTNAAAMKDKTPNL 173
>01_06_1539 + 38107108-38109649,38110563-38110915
Length = 964
Score = 30.3 bits (65), Expect = 0.75
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 256 GIVPKGVATDTALKLFSIFQQNLNNLLIRGL 164
GI+PK +A LK+F I++ N + +L GL
Sbjct: 274 GILPKEIANLKKLKIFHIYRNNFSGVLPEGL 304
>01_06_1507 -
37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 30.3 bits (65), Expect = 0.75
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 170 WAPGSRLQVSCYVCGDASHVASGCSMRYKKK 78
+ PG Q C++CG H+A+ C + K+K
Sbjct: 256 YTPGQ--QDKCFLCGQVGHLAANCEGKVKRK 284
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 29.9 bits (64), Expect = 0.99
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVC 24
C+ CG H+A+ CS + N PG +A + + +C
Sbjct: 60 CHACGLPGHIAAECSSKDLCWNCKEPGHMANSCPNEGIC 98
>03_05_0126 + 21066911-21067321
Length = 136
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 54 HSTWSSVVFLLVAHGTPRSYMTR 122
H WS VV LL HG+ R YM R
Sbjct: 92 HEKWSGVVNLLPLHGSGRWYMPR 114
>03_05_0007 -
19536239-19536532,19536937-19537047,19537126-19537690,
19537737-19537822
Length = 351
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 167 APGSRLQVSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGA 45
APG+++ GDAS ND APGA AGA
Sbjct: 82 APGTQVAAEGVKAGDASVQPGAAGEHANVYNDAAPGARAGA 122
>04_04_1647 + 35032328-35033803
Length = 491
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +2
Query: 38 LWLHLPQHLEQCR-FSSCSAWN 100
LW+H P HL CR SSC N
Sbjct: 157 LWIHSPDHLSDCRAASSCPGAN 178
>02_01_0158 - 1103461-1104186
Length = 241
Score = 28.3 bits (60), Expect = 3.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 143 SCYVCGDASHVASGC 99
SCY CG+A H+A C
Sbjct: 225 SCYNCGEAGHIARDC 239
>11_01_0439 +
3353516-3353962,3354403-3354483,3354675-3354947,
3355081-3355212,3355303-3355476,3355568-3355702,
3355746-3355797,3355954-3356093,3356574-3356705,
3356787-3356921,3356995-3357201,3357779-3357943
Length = 690
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 209 FDIPAKPEQPPHPWAPGSRL 150
F+IPAK + P PW P S L
Sbjct: 646 FEIPAKVKLVPEPWTPESGL 665
>01_01_1059 -
8356328-8356645,8357567-8357865,8358119-8358124,
8358276-8358720,8359722-8360036
Length = 460
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -1
Query: 197 AKPEQPPHPWAPGSRLQVSCYVCGDASHVASGC 99
AK + W ++ C +CG++ H GC
Sbjct: 75 AKAKATERNWKKRKEEEMICKICGESGHFTQGC 107
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 206 DIPAKPEQP-PHPWAPGSRLQVSCYVCGDASHVASGCSMRYKKKNDTAPGAVAG 48
D +PE+ P+P R V CY C + ++ G Y+++ +TAP G
Sbjct: 514 DKEVQPEKAVPNPKDSHQRAIVRCYACANICPLSQG----YRQQQETAPNNRGG 563
>06_03_0046 - 15852653-15854560
Length = 635
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 200 PAKPEQPPHPWAPGSRLQVSCYVCGDASHVASGCS 96
P E P S +SC C D H+AS CS
Sbjct: 209 PIMEEDPISARNLNSNFMLSCTRCLDKGHIASDCS 243
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -1
Query: 176 HPW-APGSRLQVSCYVCGDASHVASGC 99
HP PG R C++C A HVA C
Sbjct: 59 HPLRVPGMRPGERCFICKAADHVAKVC 85
>04_03_0114 +
11417041-11417188,11418325-11418399,11421007-11421107,
11422049-11422120,11422239-11422757,11422949-11423149
Length = 371
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRD 36
CY C + H+ C + K+K+ A A G D
Sbjct: 244 CYKCHEFGHIRRNCPLLKKRKDGIASLAARGDDSD 278
>02_05_1020 -
33561454-33561568,33561839-33562070,33563286-33563374,
33563856-33563944
Length = 174
Score = 27.1 bits (57), Expect = 7.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 149 QVSCYVCGDASHVASGCSMR 90
++ CY CG+ H A C +R
Sbjct: 85 EMKCYECGETGHFARECRLR 104
>07_03_0471 +
18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 26.6 bits (56), Expect = 9.2
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +2
Query: 41 WL-HLPQHLEQCRFSSCSAWNTQKLHDSHHRTRNS*LAGESREPTDEEVVQVLLEYRKKF 217
WL +P EQ R SA K+ + ++ L + D+E QV L+Y +
Sbjct: 284 WLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQQVALKYEDAY 343
Query: 218 E-SSICRNTLRHDARFSAEMAASTEKN 295
+ ++ ++ +A + M S K+
Sbjct: 344 QYQNVFAPLIKLEADYDKMMKESQSKD 370
>05_03_0402 + 13533055-13533501
Length = 148
Score = 26.6 bits (56), Expect = 9.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRY 87
CY+CGD H+ C Y
Sbjct: 12 CYICGDDDHMEHFCPYNY 29
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 194 KPEQPPHPWAPGSRLQVSCYVCGDASHVASGC 99
K +P + + +CY CG A H+AS C
Sbjct: 512 KASDDTNPVPAKKKKRRTCYECGIAGHLASEC 543
>04_04_1035 +
30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -2
Query: 193 NLNNLLIRGLPALACKSAVTCAVMRVM*LLGVPCATRRKTTLLQVLWQ---VQPETSTCV 23
NLN + + ++ SAV C + +M L+ P T + T+ +LW ++ T TC
Sbjct: 222 NLNQSQVDAIESVI--SAVQCRHLNLMKLIWGPPGTGKTKTVSALLWALACLKCRTLTCA 279
Query: 22 P 20
P
Sbjct: 280 P 280
>04_03_0826 +
20103105-20103697,20104222-20104391,20104487-20104716,
20104825-20104933,20104967-20105154,20105818-20105919,
20106114-20106395,20106504-20106625,20106708-20107020,
20107096-20107329,20107477-20107767,20107975-20108286
Length = 981
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 164 EPTDEEVVQVLLEYRKKFES-SICRNTL 244
EP+ E+ V++LL R+K+E+ C+ TL
Sbjct: 461 EPSQEDAVKILLGLREKYETYHKCKYTL 488
>02_05_0580 - 30117806-30118519
Length = 237
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 134 VCGDASHVASGCSMRYKKKNDTAPGAVAGAT 42
V G AS ++ GC +++ + + P A GAT
Sbjct: 145 VDGRASRISVGCRIKHHRLSGLVPAAETGAT 175
>02_05_0220 -
26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -1
Query: 206 DIPAKPEQPPH-PWAPGSRLQVSCYVCGDASHV 111
D P P+ P PW PG + GDA+++
Sbjct: 5 DAPEMPDASPRLPWEPGGVEHFDAALLGDAAYI 37
>02_02_0716 -
13264983-13265195,13265219-13265968,13266307-13266463,
13266542-13266582
Length = 386
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 194 KPEQPPHPWAPGSRLQVSCYVCGDASHVASGC 99
K + P A RLQ +CY CG H + C
Sbjct: 301 KSKGNPEVKANSRRLQDNCYRCGGRGHWSRNC 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,875,369
Number of Sequences: 37544
Number of extensions: 266697
Number of successful extensions: 1120
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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