Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0201.Seq
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 32 0.19
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_21876| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_374| Best HMM Match : Fez1 (HMM E-Value=2.8) 29 2.3
SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07) 28 3.1
SB_57505| Best HMM Match : ShTK (HMM E-Value=4.1e-06) 28 4.1
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 28 4.1
SB_11570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_59317| Best HMM Match : APT (HMM E-Value=7.8) 27 5.4
SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 5.4
SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014) 27 7.2
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 7.2
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05) 27 7.2
SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 27 7.2
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 7.2
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05) 27 7.2
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024) 27 9.5
SB_41527| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 27 9.5
SB_20774| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_20746| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 27 9.5
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.5
SB_7563| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 27 9.5
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 27 9.5
SB_52218| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 27 9.5
SB_17009| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 27 9.5
SB_14477| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 27 9.5
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 32.3 bits (70), Expect = 0.19
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 410 RXLNSVVITTKNRLFHTLRGFTLKRKNEDPDKEPK 306
R L +V++ KN++ ++ RG T + DPD+ PK
Sbjct: 2991 RSLIKIVVSLKNKICNSPRGSTTSGTSPDPDRHPK 3025
>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 161 REPTDEEVV-QVLLEYRKKFESSICRNTLRHDARFSAEMAASTEKNFESV 307
+ P +++V+ ++ E RKK E + R+++R SAE +A T + + +
Sbjct: 44 KPPVEQDVITKIREENRKKAEDELMRSSVRQFNCASAEKSAKTRRRMQKI 93
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 140 CYVCGDASHVASGC 99
CY CGD SH+A C
Sbjct: 99 CYTCGDESHIARDC 112
>SB_21876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -1
Query: 146 VSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVCSR 18
++C+ C H+A C+ K++++ AT + + C R
Sbjct: 391 ITCFKCNQQGHIARICTAPEKRRSEMWCSTCRSATHNDSACRR 433
>SB_374| Best HMM Match : Fez1 (HMM E-Value=2.8)
Length = 239
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 159 AGSPRMRRLFRFCWNIEKSLRAVSVATPFGTMPGFPQKWQLPRKKT 296
A R ++R+ +N K R VS FG G +W+L R+KT
Sbjct: 19 ASPSRSDDIYRYSYNFGKQ-RDVSRTDIFGGTTGISTQWRLLRRKT 63
>SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)
Length = 391
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 344 LKRKNEDPDKEPKRSRSFFPWKLPFLRKTWHRAEGCCDRYCSQTFFDIPAKP 189
+KRK++ P K+ K+ S + L+ + AEG D + S T I KP
Sbjct: 43 VKRKSKTPHKKRKKRNSVIIENVSKLKGDNNIAEGKIDAFASLTSTPIAGKP 94
>SB_57505| Best HMM Match : ShTK (HMM E-Value=4.1e-06)
Length = 101
Score = 27.9 bits (59), Expect = 4.1
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 382 QKIVYFTHYVALPSKEKTKILIKNQNALEVFFRGSCHFCGKPGIV-PKGVATDTALKL 212
+K + ++H+V K K +++N A SC FCG P I+ PK +A+ A K+
Sbjct: 14 KKCLMYSHFVGYCQSNK-KFMMRNCPA-------SCGFCGSPPILSPKNMASRMANKV 63
>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1958
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 143 SCYVCGDASHVASGC 99
+CY CG+ HVA GC
Sbjct: 112 TCYNCGERGHVAIGC 126
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 59 HLEQCRFSSCSAWNTQKLHDSHHRTRNS*LAGESREPTDEEVVQVLLEYR-KKFESSICR 235
HL Q + + N +KL +HH+ + E + D + + + R KK E + R
Sbjct: 95 HLSQPKLKKITQVNKKKLRATHHKAILDEIMKEKAKEIDVKKERSTISRRGKKREPEVTR 154
Query: 236 NTLRHD 253
LR D
Sbjct: 155 YVLRKD 160
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 143 SCYVCGDASHVASGC 99
+CY CG+ HVA GC
Sbjct: 369 TCYNCGERGHVAIGC 383
>SB_11570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -1
Query: 173 PWAPGSRLQVSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVCSR 18
P P + C VC DA+H C+ R +T P V G R V+ +R
Sbjct: 269 PTDPAYKSVHRCRVC-DANHSMLSCAKRRFPIPNTGPAVVPGGERLVDFVNR 319
>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1292
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 143 SCYVCGDASHVASGC 99
+CY CG+ HVA GC
Sbjct: 236 TCYNCGERGHVAIGC 250
>SB_59317| Best HMM Match : APT (HMM E-Value=7.8)
Length = 229
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 117 TRITAHVTADLQARAGSPRMRRLFRFC 197
TR+T H++ +R +PR RR+ R+C
Sbjct: 144 TRVTDHLSMT-SSRLDTPRYRRMIRYC 169
>SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 236 CDRYCSQTFFDIPAKPEQPPHPWAPGSRLQ 147
C CS F AK E+PP PWA + LQ
Sbjct: 11 CIAICSLLFV---AKTEKPPPPWARANGLQ 37
>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 143 SCYVCGDASHVASGCSMRY 87
SC +CG +HVA C RY
Sbjct: 649 SCTICGRTNHVARLCRARY 667
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 99 TPRSYMTRITAHVTADLQARAGSPRMRRLFR 191
TPR + I+A A QAR SP+ RR F+
Sbjct: 2435 TPRGRIQSISAVSRARAQARKQSPKKRRTFK 2465
>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 342
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 251 RAEGCCDRYCSQTFFDIPAKPEQ-PPHPWAPGSRLQVSCYVCGDASHVASGCSMRYKK 81
+ G + C + + KP++ G + + +C+ CG A H G S +YKK
Sbjct: 146 KGSGSSESGCVEEVHQLGKKPQKHKKFTQNKGGKPKTACHRCGSAEH--DGKSCKYKK 201
>SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)
Length = 344
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 170 WAPGSRLQVSCYVCGDASHVASGCS 96
W P S SCY CG+ H A CS
Sbjct: 290 WRPRSPSN-SCYDCGEERHFARECS 313
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 251 RAEGCCDRYCSQTFFDIPAKPEQ-PPHPWAPGSRLQVSCYVCGDASHVASGCSMRYKK 81
+ G C + + KP++ G + + +C+ CG A H G S +YKK
Sbjct: 173 KGSGSSGSGCGEEVHQLGKKPQKHKKFTQNKGGKPKTACHRCGSAEH--DGKSCKYKK 228
>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 403
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 251 RAEGCCDRYCSQTFFDIPAKPEQ-PPHPWAPGSRLQVSCYVCGDASHVASGCSMRYKK 81
+ G C + + KP++ G + + +C+ CG A H G S +YKK
Sbjct: 173 KGSGSSGSGCGEEVHQLGKKPQKHKKFTQNKGGKPKTACHRCGSAEH--DGKSCKYKK 228
>SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 379 KIVYFTHYVALPSKEKTKILIKNQNALEVFFRGSCHFCG 263
K Y TH V+ P K++ + + N N E H+ G
Sbjct: 159 KTSYITHEVSPPKKKEPEKYVPNPNRFETVSENKDHYRG 197
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -1
Query: 179 PHPWAPGSRLQVSCYVCGDASHVASGC 99
PHPW SC C D H A C
Sbjct: 149 PHPWKECPANGKSCSKCADNDHFARVC 175
>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 369
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 251 RAEGCCDRYCSQTFFDIPAKPEQ-PPHPWAPGSRLQVSCYVCGDASHVASGCSMRYKK 81
+ G C + + KP++ G + + +C+ CG A H G S +YKK
Sbjct: 173 KGSGSSGSGCGEEVHQLGKKPQKHKKFTQNKGGKPKTACHRCGSAEH--DGKSCKYKK 228
>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
Length = 415
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 251 RAEGCCDRYCSQTFFDIPAKPEQ-PPHPWAPGSRLQVSCYVCGDASHVASGCSMRYKK 81
+ G C + + KP++ G + + +C+ CG A H G S +YKK
Sbjct: 10 KGSGSSGSGCGEEVHQLGKKPQKHKKFTQNKGGKPKTACHRCGSAEH--DGKSCKYKK 65
>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
Length = 848
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 146 VSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGATR 39
V C+ CG HVAS S + K + GAV T+
Sbjct: 623 VVCFRCGKRGHVASDKSFKAIGKKYNSCGAVGHFTK 658
>SB_41527| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 358
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKKN 75
C+ CG + H A GC R +N
Sbjct: 322 CFYCGSSEHWARGCRKRRPTQN 343
>SB_20774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 185 QPPHPWAPGSRLQVSC-YVCG 126
+P +PW SRLQ+SC Y+ G
Sbjct: 30 KPQYPWNLASRLQLSCAYIDG 50
>SB_20746| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 444
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKKN 75
C+ CG + H A GC R +N
Sbjct: 408 CFYCGSSEHWARGCRKRRPTQN 429
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKKN 75
C+ CG + H A GC R +N
Sbjct: 760 CFYCGSSEHWARGCRKRRPTQN 781
>SB_7563| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 195
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKKN 75
C+ CG + H A GC R +N
Sbjct: 159 CFYCGSSEHWARGCRKRRPTQN 180
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 143 SCYVCGDASHVASGCSMRYKKKN 75
+C VCG H+A CS+ K ++
Sbjct: 643 NCRVCGRIGHLAKDCSLSSKNRH 665
>SB_52218| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 175
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKKN 75
C+ CG + H A GC R +N
Sbjct: 139 CFYCGSSEHWARGCRKRRPTQN 160
>SB_17009| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 268
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKKN 75
C+ CG + H A GC R +N
Sbjct: 232 CFYCGSSEHWARGCRKRRPTQN 253
>SB_14477| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 402
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKKN 75
C+ CG + H A GC R +N
Sbjct: 366 CFYCGSSEHWARGCRKRRPTQN 387
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKKKN 75
C+ CG + H A GC R +N
Sbjct: 408 CFYCGSSEHWARGCRKRRPTQN 429
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,032,360
Number of Sequences: 59808
Number of extensions: 309985
Number of successful extensions: 1144
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -