Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0201.Seq
         (449 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    27   0.23 
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    27   0.40 
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           24   2.2  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     24   2.2  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   3.8  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   5.0  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   6.6  
AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    22   8.7  
AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    22   8.7  

>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 0.23
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 140 CYVCGDASHVASGCSMRYK 84
           C  CGD +H ASGC+   K
Sbjct: 488 CLRCGDQTHKASGCTNEVK 506


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 0.40
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 167 APGSRLQVS-CYVCGDASHVASGC-SMRYKKKNDTAPGAVAGATRDVNVCSRASVC 6
           AP   LQ   CY C +  H+A  C S   ++K     GA     +D N   + +VC
Sbjct: 354 APAINLQQQRCYRCLERGHIARECRSPVDRQKACIRCGAEGHLAKDCNAEVKCAVC 409


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 7   HTEALEHTLTSL--VAPATAPGAVSFFFL 87
           H + L+ +   L  V PAT P ++ F FL
Sbjct: 630 HLQTLDASFNRLTRVTPATIPNSIEFLFL 658



 Score = 22.6 bits (46), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 80   SSCSAWNTQKLHDSHHRTRNS*LAGESREPTD 175
            S+C  +NT + H +HH  R +  A   R+ TD
Sbjct: 1275 SNCK-YNTTQHHQTHHERRTT--ADFGRKATD 1303


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 283 GSCHFCGKPG 254
           G+C FCG+PG
Sbjct: 74  GACFFCGQPG 83


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = -1

Query: 164 PGSRLQVSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVCSRASVC 6
           P  R +V CY C +  H A  C     ++N      V G      VC+    C
Sbjct: 654 PTPRERVRCYRCLELGHWAHDCRSPDDRQNMCIRCGVVG--HMAKVCTSQPKC 704


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 104 QKLHDSHHRTRNS*LAGES 160
           Q+LH  HH   N+   GES
Sbjct: 157 QQLHHHHHHHHNAPAGGES 175


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 140 CYVCGDASHVASGCSMRYKKKN 75
           C+ C +  H+AS C     ++N
Sbjct: 508 CFRCLEMGHIASNCRSTADRQN 529


>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 223 QYLSQHPSARCQVFRRN 273
           QY S HP+ R  + RR+
Sbjct: 259 QYFSTHPNGRNGILRRS 275


>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 161 GSRLQVSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGAT 42
           G+     C  CG A+H A  C+   K      P  +A A+
Sbjct: 251 GTNRSSLCIRCGAANHKAVNCTNDVKCLLCGGPHRIAAAS 290


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 487,083
Number of Sequences: 2352
Number of extensions: 9772
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38268990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)