Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0201.Seq
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z83244-8|CAH10803.1| 454|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z83244-3|CAD18878.1| 437|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z83244-2|CAB60300.2| 462|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical p... 29 2.1
Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical p... 29 2.1
Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical p... 29 2.1
Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical p... 29 2.1
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 29 2.1
EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform... 29 2.1
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 29 2.1
AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein. 29 2.1
AF143244-1|AAD37361.1| 462|Caenorhabditis elegans protein kinas... 29 2.1
AF143243-1|AAD37360.1| 454|Caenorhabditis elegans protein kinas... 29 2.1
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 29 2.1
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 29 2.1
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 28 3.6
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 28 3.6
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 28 3.6
U53343-1|AAA96219.2| 396|Caenorhabditis elegans Kinesin-like pr... 27 4.8
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 27 4.8
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 27 4.8
AB024340-1|BAA96455.1| 396|Caenorhabditis elegans kinesin like ... 27 4.8
Z81082-4|CAB03096.1| 176|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 27 6.3
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 27 6.3
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 27 6.3
AF099913-15|AAC68744.1| 284|Caenorhabditis elegans Hypothetical... 27 6.3
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 27 8.3
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z48795-3|CAA88727.1| 414|Caenorhabditis elegans Hypothetical pr... 27 8.3
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 27 8.3
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 27 8.3
AF043700-7|AAB97573.2| 165|Caenorhabditis elegans Hypothetical ... 27 8.3
>Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 264 ENLASCRRVLRQILLSNFFRY 202
+NLASC+RV R+I + + FR+
Sbjct: 243 QNLASCKRVFREIKMLSSFRH 263
>Z92780-8|CAI46553.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 160 PGAHG*GGCSGFAGISKKV*EQYLSQHPSARCQVFRRNGSFHGKKLRER 306
PG+ G G G+S+K E+Y+SQ P+ V R S +G+KLRE+
Sbjct: 150 PGSVGHGYAWVPPGLSRKKVEEYMSQLPN---NVVPRTNS-NGEKLREK 194
>Z92780-7|CAI46552.1| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 160 PGAHG*GGCSGFAGISKKV*EQYLSQHPSARCQVFRRNGSFHGKKLRER 306
PG+ G G G+S+K E+Y+SQ P+ V R S +G+KLRE+
Sbjct: 187 PGSVGHGYAWVPPGLSRKKVEEYMSQLPN---NVVPRTNS-NGEKLREK 231
>Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 160 PGAHG*GGCSGFAGISKKV*EQYLSQHPSARCQVFRRNGSFHGKKLRER 306
PG+ G G G+S+K E+Y+SQ P+ V R S +G+KLRE+
Sbjct: 187 PGSVGHGYAWVPPGLSRKKVEEYMSQLPN---NVVPRTNS-NGEKLREK 231
>Z92780-5|CAI46550.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 160 PGAHG*GGCSGFAGISKKV*EQYLSQHPSARCQVFRRNGSFHGKKLRER 306
PG+ G G G+S+K E+Y+SQ P+ V R S +G+KLRE+
Sbjct: 95 PGSVGHGYAWVPPGLSRKKVEEYMSQLPN---NVVPRTNS-NGEKLREK 139
>Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 264 ENLASCRRVLRQILLSNFFRY 202
+NLASC+RV R+I + + FR+
Sbjct: 243 QNLASCKRVFREIKMLSSFRH 263
>Z83244-8|CAH10803.1| 454|Caenorhabditis elegans Hypothetical
protein W06F12.1e protein.
Length = 454
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 264 ENLASCRRVLRQILLSNFFRY 202
+NLASC+RV R+I + + FR+
Sbjct: 96 QNLASCKRVFREIKMLSSFRH 116
>Z83244-3|CAD18878.1| 437|Caenorhabditis elegans Hypothetical
protein W06F12.1c protein.
Length = 437
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 264 ENLASCRRVLRQILLSNFFRY 202
+NLASC+RV R+I + + FR+
Sbjct: 79 QNLASCKRVFREIKMLSSFRH 99
>Z83244-2|CAB60300.2| 462|Caenorhabditis elegans Hypothetical
protein W06F12.1b protein.
Length = 462
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 264 ENLASCRRVLRQILLSNFFRY 202
+NLASC+RV R+I + + FR+
Sbjct: 104 QNLASCKRVFREIKMLSSFRH 124
>Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical
protein W06F12.1a protein.
Length = 634
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 264 ENLASCRRVLRQILLSNFFRY 202
+NLASC+RV R+I + + FR+
Sbjct: 276 QNLASCKRVFREIKMLSSFRH 296
>Z81068-16|CAJ30230.1| 587|Caenorhabditis elegans Hypothetical
protein F25H5.1b protein.
Length = 587
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 160 PGAHG*GGCSGFAGISKKV*EQYLSQHPSARCQVFRRNGSFHGKKLRER 306
PG+ G G G+S+K E+Y+SQ P+ V R S +G+KLRE+
Sbjct: 150 PGSVGHGYAWVPPGLSRKKVEEYMSQLPN---NVVPRTNS-NGEKLREK 194
>Z81068-15|CAB02980.2| 624|Caenorhabditis elegans Hypothetical
protein F25H5.1a protein.
Length = 624
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 160 PGAHG*GGCSGFAGISKKV*EQYLSQHPSARCQVFRRNGSFHGKKLRER 306
PG+ G G G+S+K E+Y+SQ P+ V R S +G+KLRE+
Sbjct: 187 PGSVGHGYAWVPPGLSRKKVEEYMSQLPN---NVVPRTNS-NGEKLREK 231
>Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 160 PGAHG*GGCSGFAGISKKV*EQYLSQHPSARCQVFRRNGSFHGKKLRER 306
PG+ G G G+S+K E+Y+SQ P+ V R S +G+KLRE+
Sbjct: 187 PGSVGHGYAWVPPGLSRKKVEEYMSQLPN---NVVPRTNS-NGEKLREK 231
>Z81068-13|CAJ30228.1| 532|Caenorhabditis elegans Hypothetical
protein F25H5.1c protein.
Length = 532
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 160 PGAHG*GGCSGFAGISKKV*EQYLSQHPSARCQVFRRNGSFHGKKLRER 306
PG+ G G G+S+K E+Y+SQ P+ V R S +G+KLRE+
Sbjct: 95 PGSVGHGYAWVPPGLSRKKVEEYMSQLPN---NVVPRTNS-NGEKLREK 139
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 47 HLPQHLEQCRFSSCSAWNTQKLHD--SHHRTRNS 142
H+P+HL+Q R S+ ++ H+ S HR RNS
Sbjct: 269 HIPRHLQQQRSRHDSSSGSESEHETRSSHRRRNS 302
>EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform
protein.
Length = 656
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 160 PGAHG*GGCSGFAGISKKV*EQYLSQHPSARCQVFRRNGSFHGKKLRER 306
PG+ G G G+S+K E+Y+SQ P+ V R S +G+KLRE+
Sbjct: 187 PGSVGHGYAWVPPGLSRKKVEEYMSQLPN---NVVPRTNS-NGEKLREK 231
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 47 HLPQHLEQCRFSSCSAWNTQKLHD--SHHRTRNS 142
H+P+HL+Q R S+ ++ H+ S HR RNS
Sbjct: 269 HIPRHLQQQRSRHDSSSGSESEHETRSSHRRRNS 302
>AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein.
Length = 634
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 264 ENLASCRRVLRQILLSNFFRY 202
+NLASC+RV R+I + + FR+
Sbjct: 276 QNLASCKRVFREIKMLSSFRH 296
>AF143244-1|AAD37361.1| 462|Caenorhabditis elegans protein kinase
LIT-1b protein.
Length = 462
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 264 ENLASCRRVLRQILLSNFFRY 202
+NLASC+RV R+I + + FR+
Sbjct: 104 QNLASCKRVFREIKMLSSFRH 124
>AF143243-1|AAD37360.1| 454|Caenorhabditis elegans protein kinase
LIT-1a protein.
Length = 454
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 264 ENLASCRRVLRQILLSNFFRY 202
+NLASC+RV R+I + + FR+
Sbjct: 96 QNLASCKRVFREIKMLSSFRH 116
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 28.7 bits (61), Expect = 2.1
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = -2
Query: 262 KPGIVPKGVATDTAL-----KLFSIFQQNLNNL-LIRGLPALACKSAVTCAVMRVM*LLG 101
+P V GV T T L + ++N L ++ LPAL K V A+++ LG
Sbjct: 133 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
Query: 100 VPCATRRKTTLLQVLWQVQPETSTCVPEL 14
RRKTT L V PE + + +L
Sbjct: 193 T--VVRRKTTAAVALVDVNPEDKSALNKL 219
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 28.7 bits (61), Expect = 2.1
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = -2
Query: 262 KPGIVPKGVATDTAL-----KLFSIFQQNLNNL-LIRGLPALACKSAVTCAVMRVM*LLG 101
+P V GV T T L + ++N L ++ LPAL K V A+++ LG
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
Query: 100 VPCATRRKTTLLQVLWQVQPETSTCVPEL 14
RRKTT L V PE + + +L
Sbjct: 173 T--VVRRKTTAAVALVDVNPEDKSALNKL 199
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKK 81
CY CG HV+S C R +K
Sbjct: 137 CYTCGSEEHVSSICPERRRK 156
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKK 81
CY CG HV+S C R +K
Sbjct: 168 CYTCGSEEHVSSICPERRRK 187
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKK 81
CY CG HV+S C R +K
Sbjct: 168 CYTCGSEEHVSSICPERRRK 187
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 140 CYVCGDASHVASGCSMRYKK 81
CY CG HV+S C R +K
Sbjct: 168 CYTCGSEEHVSSICPERRRK 187
>U53343-1|AAA96219.2| 396|Caenorhabditis elegans Kinesin-like
protein protein 13 protein.
Length = 396
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 188 QVLLEYRKKFESSICRNTLRHDARFSAEMAASTEKNFESV 307
+VLL +KFE++I R +H+ +F + + N E V
Sbjct: 53 RVLLVDPEKFENNILRQNRQHERKFEFDASFGATSNQEDV 92
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 27.5 bits (58), Expect = 4.8
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 179 EVVQVLLEYRKKFESSICRNTLRHDARFSAEMAASTEKNFESVL 310
EV EYRKKF+ LR AR + A+ EK ESV+
Sbjct: 374 EVTSEFAEYRKKFQQQ--EEELRRKARLLTVVEAAKEK-LESVI 414
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -2
Query: 304 ALEVFFRGSCHFCGKPGIVPKGVATDTALKLFSIFQQNLNNLLIRGLPALACKS 143
+LEV+ C + PG+ + + T +KL +I + N + +G+ C +
Sbjct: 927 SLEVYMLDPCWYYTSPGLAWEAMLKKTGVKLQTIKDIEMYNFIEKGIRGGICNA 980
>AB024340-1|BAA96455.1| 396|Caenorhabditis elegans kinesin like
protein KLP-13 protein.
Length = 396
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 188 QVLLEYRKKFESSICRNTLRHDARFSAEMAASTEKNFESV 307
+VLL +KFE++I R +H+ +F + + N E V
Sbjct: 53 RVLLVDPEKFENNILRQNRQHERKFEFDASFGATSNQEDV 92
>Z81082-4|CAB03096.1| 176|Caenorhabditis elegans Hypothetical
protein F42G4.3b protein.
Length = 176
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/44 (27%), Positives = 16/44 (36%)
Frame = -1
Query: 146 VSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVCSRA 15
V C+ CG S +G S T G + C+RA
Sbjct: 7 VDCFKCGQCSKTLAGASFYNIDDKPTCEGCYQNSLEKCTACNRA 50
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical
protein F42G4.3a protein.
Length = 603
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/44 (27%), Positives = 16/44 (36%)
Frame = -1
Query: 146 VSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVCSRA 15
V C+ CG S +G S T G + C+RA
Sbjct: 434 VDCFKCGQCSKTLAGASFYNIDDKPTCEGCYQNSLEKCTACNRA 477
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = -1
Query: 281 KLPFLRKTWHR-----AEGCCDRYCSQTFFDIPAKPEQPPHPWAP 162
K+P + W + A +R+ + F I + EQPP PW P
Sbjct: 1775 KMPMIEVIWTQLAMKMALSTSNRHLAGRCFQIVSALEQPPGPWIP 1819
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = -1
Query: 281 KLPFLRKTWHR-----AEGCCDRYCSQTFFDIPAKPEQPPHPWAP 162
K+P + W + A +R+ + F I + EQPP PW P
Sbjct: 1803 KMPMIEVIWTQLAMKMALSTSNRHLAGRCFQIVSALEQPPGPWIP 1847
>AF099913-15|AAC68744.1| 284|Caenorhabditis elegans Hypothetical
protein C29F9.1 protein.
Length = 284
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 200 PAKPEQPPHPWAPGSRLQVSCYVCGDASHV 111
P+ PE P P+ PG Q C ++H+
Sbjct: 28 PSSPEPPYDPYPPGIHAQAGCATRPISAHI 57
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 146 LAGESREPTDEEVVQVLLEYRKKFESSICRNTLRHDARFSAEMAASTEK 292
L E+R+ DEE +V+ E RKK E + R D A A K
Sbjct: 1382 LLAEARKKLDEENREVMEELRKKKEKELSAEKERADMAEQARDKAERAK 1430
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 146 LAGESREPTDEEVVQVLLEYRKKFESSICRNTLRHDARFSAEMAASTEK 292
L E+R+ DEE +V+ E RKK E + R D A A K
Sbjct: 1382 LLAEARKKLDEENREVMEELRKKKEKELSAEKERADMAEQARDKAERAK 1430
>Z48795-3|CAA88727.1| 414|Caenorhabditis elegans Hypothetical
protein R05H5.4 protein.
Length = 414
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 161 REPTDEEVVQVLLEYRKKFESSICRNTLRHDARFSAEMAASTEKNFESV 307
+ PT EE+ + L E++KK E+SI + ++++ S+E +SV
Sbjct: 360 KRPTAEELKEKLEEFKKKTENSITTSAPPTSVE-KSKLSVSSEPTTKSV 407
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 146 LAGESREPTDEEVVQVLLEYRKKFESSICRNTLRHDARFSAEMAASTEK 292
L E+R+ DEE +V+ E RKK E + R D A A K
Sbjct: 1382 LLAEARKKLDEENREVMEELRKKKEKELSAEKERADMAEQARDKAERAK 1430
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 143 SCYVCGDASHVASGCSMRYKKKNDTAPG 60
+CY CG H A+ C R KK +++ G
Sbjct: 410 NCYYCGKRGHTANEC--RRKKSDESQNG 435
>AF043700-7|AAB97573.2| 165|Caenorhabditis elegans Hypothetical
protein K09H9.7 protein.
Length = 165
Score = 26.6 bits (56), Expect = 8.3
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Frame = +2
Query: 38 LWLHLPQHLEQCRF--SSCSA-WNTQK--LHD--SHHRTRNS*LAGESREPTDEEVVQVL 196
L+ H+ QH+E+ R+ S+CS + T++ LH H R RN L E ++ + Q+L
Sbjct: 97 LYKHMKQHVEKTRYSCSTCSGRFETEEAGLHHLLIHRRRRNVKLFDEWDGEAEKRIDQLL 156
Query: 197 L 199
+
Sbjct: 157 M 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,069,054
Number of Sequences: 27780
Number of extensions: 233562
Number of successful extensions: 802
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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