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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0201.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c...    33   0.089
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    33   0.12 
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    32   0.21 
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    29   1.1  
At4g21840.1 68417.m03158 methionine sulfoxide reductase domain-c...    29   1.5  
At4g21830.1 68417.m03157 methionine sulfoxide reductase domain-c...    29   1.5  
At4g04220.1 68417.m00598 disease resistance family protein conta...    29   1.5  
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    29   1.9  
At4g10390.1 68417.m01705 protein kinase family protein contains ...    28   2.5  
At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein...    28   3.4  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    28   3.4  
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein...    27   4.4  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    27   4.4  
At5g07870.1 68418.m00906 transferase family protein similar to a...    27   5.9  
At5g07860.1 68418.m00904 transferase family protein similar to a...    27   5.9  
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c...    27   5.9  
At2g33360.1 68415.m04089 expressed protein                             27   5.9  
At2g28620.1 68415.m03479 kinesin motor protein-related                 27   5.9  
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei...    27   5.9  
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei...    27   5.9  
At1g75880.2 68414.m08814 family II extracellular lipase 1 (EXL1)...    27   5.9  
At1g75880.1 68414.m08813 family II extracellular lipase 1 (EXL1)...    27   5.9  
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ...    27   7.7  
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein...    27   7.7  
At5g20610.1 68418.m02448 expressed protein                             27   7.7  
At2g30220.1 68415.m03676 GDSL-motif lipase/hydrolase family prot...    27   7.7  
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /...    27   7.7  
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c...    27   7.7  

>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 299

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 140 CYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVC 24
           CY CGD  HVA  C+ +     D   GAV G       C
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQR-GAVKGGNDGCYTC 203



 Score = 29.9 bits (64), Expect = 0.83
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 140 CYVCGDASHVASGCSMRYKKKNDTAPGAVAG 48
           CY CGD  H A  C+ +    N  + G  +G
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSG 230


>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -1

Query: 164 PGSRLQ--VSCYVCGDASHVASGCSMRYKK--KNDTAPGAVAGATRDVNVCSR 18
           PG+ L   VSCY CG   H    C   Y++  +ND+A       +R+ + C R
Sbjct: 277 PGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYR 329



 Score = 30.7 bits (66), Expect = 0.48
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 146 VSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGA-TRDVNVCSRASVCY 3
           VSCY CG+  H +  C    K++    P  + G+       CS+   CY
Sbjct: 166 VSCYSCGEQGHTSFNCPTPTKRRK---PCFICGSLEHGAKQCSKGHDCY 211



 Score = 23.4 bits (48), Expect(2) = 2.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 266 RKTWHRAEGCCDRY 225
           +KT HRA+ C D+Y
Sbjct: 214 KKTGHRAKDCPDKY 227



 Score = 23.4 bits (48), Expect(2) = 2.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 179 PHPWAPGSRLQVSCYVCGDASHVASGCSMRYKKKN 75
           P  +  GS+  V C  CGD  H    C   Y K++
Sbjct: 224 PDKYKNGSKGAV-CLRCGDFGHDMILCKYEYSKED 257


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 140 CYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRD 36
           CY CG+  H+++ C ++ +K +D A   +   T D
Sbjct: 397 CYECGEKGHLSTACPIKLQKADDQANSKLGQETVD 431



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 143 SCYVCGDASHVASGCSMRYKKK 78
           +CY CG+  H++S C  + +K+
Sbjct: 575 NCYECGEKGHLSSACPNKLQKQ 596



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -1

Query: 143 SCYVCGDASHVASGCSMRYKKKNDT 69
           +CY CG+  H+++ C ++ +  + T
Sbjct: 480 NCYECGEKGHLSTACPIKLQNTSHT 504


>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 170 WAPGSRLQVSCYVCGDASHVASGCSMRYKKK 78
           + PG   Q  C++CG   H AS C  + KK+
Sbjct: 256 YTPGQ--QERCFLCGQMGHFASNCEGKPKKR 284


>At4g21840.1 68417.m03158 methionine sulfoxide reductase
           domain-containing protein / SelR domain-containing
           protein weak similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 143

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 212 FFD-IPAKPEQPPHPWAPGSRLQVSCYVC-GDASHVASG 102
           FFD IP   +Q P   A G R++++C VC G   HV  G
Sbjct: 80  FFDAIPGAIKQTPE--AGGRRMEITCAVCDGHLGHVFKG 116


>At4g21830.1 68417.m03157 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 144

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 212 FFD-IPAKPEQPPHPWAPGSRLQVSCYVC-GDASHVASG 102
           FFD IP   +Q P   A G R++++C VC G   HV  G
Sbjct: 81  FFDAIPGAIKQTPE--AGGRRMEITCAVCDGHLGHVFKG 117


>At4g04220.1 68417.m00598 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-2A [Lycopersicon
           pimpinellifolium] gi|3894389|gb|AAC78594
          Length = 811

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 256 GIVPKGVATDTALKLFSIFQQNLNNLLIRGLPALAC 149
           G +P+G++  T+LK+  + + NL+  L   L  L C
Sbjct: 551 GSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTC 586


>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = -1

Query: 341 KRKNEDPDKEPKRSRSFFPWKLPFLRKTWHRAEGCCDRYCSQTFF--DIPAKPEQPPHPW 168
           + ++    ++  RSRS    ++   R ++H A    +R   + F   ++    ++P H  
Sbjct: 8   RSRSRSRSRDRFRSRSPRDRRMRSERVSYHDAPSRREREPRRAFSQGNLCNNCKRPGHFA 67

Query: 167 APGSRLQVSCYVCGDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVC 24
              S + V C  CG   H+A+ C+   +  N   PG VA    +  +C
Sbjct: 68  RDCSNVSV-CNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGIC 114


>At4g10390.1 68417.m01705 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 342

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +3

Query: 39  SGCTCHSTWSSVVFL------LVAHGTPRS-YMTRITAHVTADLQARAGSPRMRRLFR 191
           SG TC+++W  V  L      L+  G   S YM R +    A L+    S R+ ++FR
Sbjct: 25  SGVTCYNSWDDVETLTSNFSRLIGSGGYSSIYMARFSGSDKAALKVHVSSHRLYQVFR 82


>At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 479

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 197 AKPEQPPHPWAPGSRLQVSCYVCGDASHVASGC 99
           AK +     W      ++ C +CG++ H   GC
Sbjct: 75  AKSKATERNWKKRKEEEMICKICGESGHFTQGC 107


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 149 QVSCYVCGDASHVASGCSMRYKKKNDTA 66
           Q  C+VCG   H AS C  +    N  A
Sbjct: 262 QEKCFVCGQTGHFASDCPGKSGSNNAAA 289


>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 268

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 179 PHPWAPGSRLQVSCYVCGDASHVASGC 99
           P+P   G     SC++C    H++  C
Sbjct: 141 PYPMEDGGTKFASCFICKGQGHISKNC 167


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 216 LRAVSVATPFGTMPGFPQ 269
           L+ V+V  PFGT+P  PQ
Sbjct: 667 LQPVAVTNPFGTLPAMPQ 684


>At5g07870.1 68418.m00906 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 464

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 128 GDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVC 24
           G A  V SG   +Y  K    PG   GA+ D+ VC
Sbjct: 407 GKAVAVRSGYGGKYDGKVSAYPGRQGGASIDLEVC 441


>At5g07860.1 68418.m00904 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 454

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 128 GDASHVASGCSMRYKKKNDTAPGAVAGATRDVNVC 24
           G A  V SG   +Y  K    PG   GA+ D+ VC
Sbjct: 395 GKAVAVRSGYGGKYDGKVSAYPGREGGASIDLEVC 429


>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
           contains Pfam domains PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 203

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 161 GSRLQVSCYVCGDASHVASGCS 96
           G R    CY CG+  H+A  CS
Sbjct: 124 GGRGGSDCYKCGEPGHMARDCS 145


>At2g33360.1 68415.m04089 expressed protein
          Length = 603

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 33  DVSGCTCHSTWSSVVFLLVAHGTPRS 110
           D S C+ HST   VV  L  HG PR+
Sbjct: 467 DASKCSKHSTSIDVVIPLGIHGGPRN 492


>At2g28620.1 68415.m03479 kinesin motor protein-related 
          Length = 1076

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 188 QVLLEYRKKFESSICRNTLRHDARFSAEMAASTEKNFESVLVLYQDLR 331
           Q L  + KKFE SI     +   + +  +A+S  +  E V +  QD+R
Sbjct: 749 QKLSAFTKKFEESIANEEKQMLEKVAELLASSNARKKELVQIAVQDIR 796


>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 611

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 233 DRYCSQTFFDIPAKPEQPPHPWAPGSRLQVSCYVCGD 123
           D +      DIPA  E P  PW P SRL  +  V GD
Sbjct: 426 DTFLLDLSMDIPAWREIPV-PWTPPSRLGHTLTVYGD 461


>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 601

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 233 DRYCSQTFFDIPAKPEQPPHPWAPGSRLQVSCYVCGD 123
           D +      DIPA  E P  PW P SRL  +  V GD
Sbjct: 416 DTFLLDLSMDIPAWREIPV-PWTPPSRLGHTLTVYGD 451


>At1g75880.2 68414.m08814 family II extracellular lipase 1 (EXL1)
           EXL1 (PMID:11431566); similar to anter-specific
           proline-rich protein (APG) SP:P40602 [Arabidopsis
           thaliana]
          Length = 374

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = -2

Query: 388 LPQKIVYFTHYV----ALPSKEKTKILIKN 311
           LPQ+++YF  Y+     +  +++TK +IKN
Sbjct: 152 LPQQLIYFEEYIEKLKQMVGEKRTKFIIKN 181


>At1g75880.1 68414.m08813 family II extracellular lipase 1 (EXL1)
           EXL1 (PMID:11431566); similar to anter-specific
           proline-rich protein (APG) SP:P40602 [Arabidopsis
           thaliana]
          Length = 375

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = -2

Query: 388 LPQKIVYFTHYV----ALPSKEKTKILIKN 311
           LPQ+++YF  Y+     +  +++TK +IKN
Sbjct: 153 LPQQLIYFEEYIEKLKQMVGEKRTKFIIKN 182


>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
           subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
           protein GI:497629, SP:P42762 from [Arabidopsis
           thaliana]; contains Pfam profile PF02861: Clp amino
           terminal domain
          Length = 945

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +2

Query: 164 EPTDEEVVQVLLEYRKKFES-SICRNTL 244
           EP++E+ V++LL  R+K+E+   C+ T+
Sbjct: 454 EPSEEDAVKILLGLREKYEAHHNCKYTM 481


>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 254

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 146 VSCYVCGDASHVASGCSMRY 87
           VSCY CG   H    C   Y
Sbjct: 77  VSCYRCGQLGHTGLACGRHY 96


>At5g20610.1 68418.m02448 expressed protein
          Length = 1164

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 314 EPKRSRSFFPWKLPFLRKTWHRAEGCC 234
           EPK  +SF+ W L  +    +R   CC
Sbjct: 54  EPKEKKSFWNWPLRAINHVRNRRFNCC 80


>At2g30220.1 68415.m03676 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 358

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -2

Query: 205 IFQQNLNNLLIRGLPALACKSAVTCAVMRVM*LLGVPCATRRKTTLL--QVLWQVQPETS 32
           ++     N+L+ GLP + C      A +R   +LG+      K ++L  Q L +  PE  
Sbjct: 210 LYSLGCRNILVGGLPPMGCLPIQLTAKLRT--ILGICVEQENKDSILYNQKLVKKLPEIQ 267

Query: 31  TCVP 20
             +P
Sbjct: 268 ASLP 271


>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
           glycine-rich protein (GRP2) identical to Glycine-rich
           protein 2b (AtGRP2b) [Arabidopsis thaliana]
           SWISS-PROT:Q38896; contains Pfam domains PF00313:
           'Cold-shock' DNA-binding domain and PF00098: Zinc
           knuckle
          Length = 201

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 146 VSCYVCGDASHVASGCS 96
           +SCY CG++ H A  C+
Sbjct: 180 LSCYSCGESGHFARDCT 196


>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 301

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 140 CYVCGDASHVASGC 99
           CY+CGD  H A  C
Sbjct: 132 CYMCGDVGHFARDC 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,264,150
Number of Sequences: 28952
Number of extensions: 207009
Number of successful extensions: 759
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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