Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0200.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05770 Cluster: Lipooligosaccharide biosynthesis protei...    36   0.62 
UniRef50_UPI000049A038 Cluster: serine protease inhibitor; n=1; ...    34   2.5  
UniRef50_Q4XYU9 Cluster: Putative uncharacterized protein; n=3; ...    33   3.3  
UniRef50_UPI0000D570E7 Cluster: PREDICTED: similar to Protein KI...    33   4.4  
UniRef50_Q08PT2 Cluster: Probable membrane protein, putative; n=...    33   5.8  
UniRef50_Q54LW1 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_Q7RWM9 Cluster: Palmitoyltransferase SWF1; n=5; Pezizom...    33   5.8  

>UniRef50_Q05770 Cluster: Lipooligosaccharide biosynthesis protein
           lpsA; n=2; Mannheimia haemolytica|Rep:
           Lipooligosaccharide biosynthesis protein lpsA -
           Pasteurella haemolytica (Mannheimia haemolytica)
          Length = 263

 Score = 35.9 bits (79), Expect = 0.62
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 105 WCIVFVENQEEIGLVEDEVWLGNHAFSLLFCGLFEVNTHMAQ 230
           W +   +N + I + ED+++LGN+AF LL       NTH+ +
Sbjct: 71  WHLAKQQNLDYICIFEDDIYLGNNAFELLKTNYIPENTHIVK 112


>UniRef50_UPI000049A038 Cluster: serine protease inhibitor; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: serine protease
           inhibitor - Entamoeba histolytica HM-1:IMSS
          Length = 371

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 161 DFIFNKPYFFLILNKYNAPGFVGLITH 81
           D I NKPYFF+I+ +   P F G ++H
Sbjct: 341 DVIINKPYFFVIIGEEQYPLFFGKVSH 367


>UniRef50_Q4XYU9 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 1872

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -1

Query: 209 FEQPTEEQAESVVAEPDFIFNKPYFFLILNKYNAPGFVGLITH*VLKKLSRFRTKFNVYI 30
           F Q   ++   ++ +   I+ K  +F   N YN  G + L  H  +KK+ +F     V I
Sbjct: 373 FNQSKNDKNNILLTDKSCIYQKDLYFFCNNTYNISGNIFLFFHFNIKKIKKFYKILKVVI 432

Query: 29  PK 24
            K
Sbjct: 433 EK 434


>UniRef50_UPI0000D570E7 Cluster: PREDICTED: similar to Protein
           KIAA0690; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to Protein KIAA0690 - Tribolium castaneum
          Length = 1288

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = +1

Query: 166 SATTLSACSSVGCSKSIRIWLSIWDIYPDFCHRPYRSRRSFSQKSLSRVRPF*LQVHNHV 345
           SA    A   +G   S  +++ +W++ P FC+ P   + SF  KS+++V      + +  
Sbjct: 606 SAQLAEANDGIGAHSSELLYMQLWNLLPCFCNHPTDIKDSF--KSVAKV--LGTAISDRK 661

Query: 346 NLSMSIRSELR 378
            L +S+ + LR
Sbjct: 662 ELRLSVMASLR 672


>UniRef50_Q08PT2 Cluster: Probable membrane protein, putative; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Probable membrane
           protein, putative - Stigmatella aurantiaca DW4/3-1
          Length = 306

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 158 SLARQPRFQLALLWAVRSQYAYGSAYGIYILIFVIDRIEAVEVFLKNLC 304
           ++ R+PRF   LLWA+R  +       +Y+    IDR+      L N C
Sbjct: 60  AVRRRPRFGRPLLWALRGVF---GGISVYLYFVCIDRVAVGPAVLLNAC 105


>UniRef50_Q54LW1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 235

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 87  DKANETWCI-VFVENQEEIGLVEDEVWLGNHAFSLLFCGLFEVNTHMAQHM 236
           DK     CI +F +NQ  IG+++ E W  NH  S +   + +V   ++ ++
Sbjct: 185 DKVKSEICIPIFDKNQNVIGIIDAESWKDNHFSSKILLEIVKVAISLSNYL 235


>UniRef50_Q7RWM9 Cluster: Palmitoyltransferase SWF1; n=5;
           Pezizomycotina|Rep: Palmitoyltransferase SWF1 -
           Neurospora crassa
          Length = 429

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 143 PYFFLILNKYNAPGFVGLITH*VLKKLSRFRTKFNVYIP--KCFDCCLI 3
           PY FL L+ Y  PG +   TH  +++++R+   F ++ P   C  C L+
Sbjct: 118 PYIFLYLSAYTDPGVINAKTH--VREMARYPYDFTLFHPGTSCETCHLL 164


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,950,778
Number of Sequences: 1657284
Number of extensions: 9411336
Number of successful extensions: 24090
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24089
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)