Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0200.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.60
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 28 0.79
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 1.4
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 3.2
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 3.2
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 3.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 5.6
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 7.3
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 25 9.7
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 25 9.7
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 25 9.7
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 9.7
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.7 bits (61), Expect = 0.60
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +3
Query: 264 TVSKPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTASFKYLDSV*VKIYGSVAGSRSL 443
T S S+ S + S +GT S NVNS+G +S + + I GS + +
Sbjct: 610 TTSSTSEIVSTPASNSNTGSLNGT---SSFNVNSVGPSSSQTTPTSSSSITGSQSLKETS 666
Query: 444 LKATLRSSXSFNESPXDDGNTTFK*TGRS 530
A + S+ S+ S D ++T+ TG S
Sbjct: 667 SPAYVSSTVSYTSSSV-DSSSTYNSTGSS 694
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 28.3 bits (60), Expect = 0.79
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 209 FEQPTEEQAESVVAEPDFIFNKPYFFLILNK 117
+ +PT E+A++V+AE + + NKP + + K
Sbjct: 1074 YSRPTIEEAKTVLAESENLTNKPEEYTVAQK 1104
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 1.4
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = -2
Query: 532 QDLPVYLKVVFPSSWGLSLNDXEDLSVAFNKLRDPATLPYILTQTESKYLKLAVPIELTL 353
Q LP Y KV G+ E+ +F K AT PYI + T Y +PI
Sbjct: 36 QSLPPYPKVASKLK-GVVAGGKENNIASFQKPSSKATRPYIPSYTRLTYSVPPLPIPPPS 94
Query: 352 RDSRDYV 332
S D +
Sbjct: 95 EQSLDTI 101
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 448 KRR*DPRCHLMKVPXTTEIPLSNKLEDLDA 537
K+R +CH +K T EIPL+ K L++
Sbjct: 181 KKRPSSKCHEIKPLTTREIPLARKRSRLNS 210
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -2
Query: 529 DLPVYLKVVFPSSWGLSLNDXEDLSVAFNKLRDP--ATLPYILTQT 398
DL ++++ ++ + SLN DL++ +L+DP + P+++ T
Sbjct: 582 DLGLFVQRLYKIIFPFSLNPDADLNLKIKRLKDPDAPSKPFVVNAT 627
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 298 IFEKNFDGFDTVYDKNQDIYPIC*AICVLTSNSP 197
IFEK D D V KN+ + +C +C+L +P
Sbjct: 747 IFEKLNDLLDDV--KNETLQALCKTVCLLIETTP 778
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 5.6
Identities = 26/90 (28%), Positives = 42/90 (46%)
Frame = +3
Query: 210 VNTHMAQHMGYIS*FLS*TVSKPSKFFSKISVKSPALLTSGT*SRESLNVNSIGTASFKY 389
V++ +A + Y+S S + S + SV SPA+ +S E+L SI + Y
Sbjct: 175 VSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNSPAVSSS-----ETLTSVSITSTESAY 229
Query: 390 LDSV*VKIYGSVAGSRSLLKATLRSSXSFN 479
S V I S S +L +T ++ SF+
Sbjct: 230 TSSS-VDIAASTTASSTLPVSTSEATVSFS 258
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 367 IELTLRDSRDYVPEVKRAGLLTEIFEKNFDG 275
+ LT+ +V V +AG+L +E +DG
Sbjct: 155 LSLTVAQRHPFVDTVTKAGILLNYWENAYDG 185
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 87 DKANETWCIVFVENQEEIGLVEDEVWLGNHAFSLLFC 197
D E+W V N E ++ DE+ +G++AF L+C
Sbjct: 40 DGKMESWS--GVRNYEARNMIRDEIKIGDYAF--LYC 72
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 242 YILIFVIDRIEAVEVFLKNLCQESGP 319
YI ++ EAVE FL + +SGP
Sbjct: 139 YIQSLIVTHNEAVERFLLSFSNQSGP 164
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 182 QLALLWAVRSQYAYGSAYGIYILIFVIDRIEAVEVFLKNLCQE 310
QLAL W +++ Y + G +++ ++AVE F+ L E
Sbjct: 283 QLALAWTLKNPYVSTTILGASKPEQIVENVKAVE-FIDKLTPE 324
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 221 YGSAYGIYILIFVIDRIEAVEVFLKNLCQESGPFNFRYI 337
YG+ YG +I+I V V +F ++G F Y+
Sbjct: 482 YGACYGAFIIILVFITEFYVSIFPIGASPDAGAFFQSYL 520
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -2
Query: 424 TLPYILTQTESKYLKLAVPIELTLRDSRDYVPEVKRAGLLTEI 296
+LP + + E+K KL PIE + +++ + E+++ TE+
Sbjct: 62 SLPKLSSLEENKLTKLKAPIE-DMENTKKELEEIRKQSTETEL 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,214
Number of Sequences: 5004
Number of extensions: 42885
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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