Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0200.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1365 - 36690267-36692222                                         28   5.6  
01_01_0764 + 5910687-5910961,5912549-5912636,5912750-5912909,591...    28   5.6  
10_08_0684 - 19870715-19872994                                         27   9.9  
03_01_0131 - 1013982-1016246                                           27   9.9  

>01_06_1365 - 36690267-36692222
          Length = 651

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 166 SATTLSACSSVGCSKSIRIWLSIWDIYPDFCHRPYRSRRS 285
           SA+  +A S  G +K  R W   W ++  F HR    RRS
Sbjct: 474 SASLEAALSGPGSAKKPRRWRKAWSLW-GFIHRRASGRRS 512


>01_01_0764 +
           5910687-5910961,5912549-5912636,5912750-5912909,
           5913017-5913237,5913315-5913610,5914176-5914287,
           5914376-5914514,5914850-5915046,5915134-5915223,
           5915611-5915646
          Length = 537

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 229 SIWDIYPDFCHRPYRSRRSFSQKSLSRVRP 318
           ++ D +PDF H  Y S +S  +K    +RP
Sbjct: 362 AVIDTFPDFFHDKYSSEQSIFEKIAKGLRP 391


>10_08_0684 - 19870715-19872994
          Length = 759

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 197 TEEQAESVVAEPDFIFNKPYFFLILNKYNAPGFVGL 90
           T+E+AE+V A    +   P  FL L    +PGF+GL
Sbjct: 95  TDEEAEAVRATAGCLRLYPEEFLPLATTRSPGFLGL 130


>03_01_0131 - 1013982-1016246
          Length = 754

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 242 ISHMLSHMRIDFE-QPTEEQAESVVAEPDFIFNKPYFFLILNKYNAPGFVGL 90
           I +  SH+   F  Q T+++AE++  +   I   P  FL L   ++PGF+GL
Sbjct: 72  IIYSYSHVLSGFAAQLTDDEAEAMRKKEGCIRLYPEEFLPLATTHSPGFLGL 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,032,160
Number of Sequences: 37544
Number of extensions: 237242
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)