Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0200.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17803| Best HMM Match : SRCR (HMM E-Value=0)                        29   3.3  
SB_23399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1428

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 166 SATTLSACSSVGCSKSIRIWL 228
           SAT+ S C   G SKS R+WL
Sbjct: 186 SATSTSCCGKYGPSKSRRVWL 206


>SB_23399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 125 LNKYNAPGFVGLITH*VLKKLSRFRTK--FNVYIPKCFD 15
           L + + PG  GL +   LK+ SR+      N+Y+P  FD
Sbjct: 302 LERTDKPGISGLTSKEFLKEFSRYHPNGTANLYVPYAFD 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,039
Number of Sequences: 59808
Number of extensions: 289762
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)