Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0200.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.67 
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   6.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 236 HMLSHMRIDFEQPTEEQAESVVAEP 162
           H L + + ++EQP+EE  + +  +P
Sbjct: 340 HRLVYFQNEYEQPSEEDLKRITNQP 364



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 347 ISQCQFDRNCELQVFRLGLSQDIRQRR 427
           + QC++  NCE+ ++     Q+ R ++
Sbjct: 220 VYQCKYGNNCEIDMYMRRKCQECRLKK 246


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 347 ISQCQFDRNCELQVFRLGLSQDIRQRR 427
           + QC++  NCE+ ++     Q+ R ++
Sbjct: 17  VYQCKYGNNCEIDMYMRRKCQECRLKK 43


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 75  FKKVIKIQDEIQRLHSKM 22
           F+K+I+I+D++  L  K+
Sbjct: 562 FRKLIRIEDDVATLRMKL 579


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 286 NFDGFDTVYDKNQDIY 239
           +FDG + +Y K+ DI+
Sbjct: 110 DFDGINYIYVKSDDIW 125


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 244 YPDFCHRPYRSRRSF 288
           +P F  + YR+RR F
Sbjct: 199 HPGFADKEYRARRKF 213


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 75  FKKVIKIQDEIQRLHSKM 22
           F+K+I+I+D +  L  K+
Sbjct: 615 FRKLIRIEDNVATLRMKL 632


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 250 DFCHRPYRSRRSF-SQKSL 303
           +FC+R YR++ S  + KSL
Sbjct: 39  EFCNRRYRTKNSLTTHKSL 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,520
Number of Sequences: 438
Number of extensions: 2611
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)