Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0200.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin...    31   0.67 
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr...    30   1.2  
At1g27260.1 68414.m03321 paired amphipathic helix repeat-contain...    28   4.7  
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    27   6.2  

>At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase
           2 (SERK2) nearly identical to somatic embryogenesis
           receptor-like kinase 2 [Arabidopsis thaliana]
           GI:14573457; contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain; identical to
           cDNA somatic embryogenesis receptor-like kinase 2
           (SERK2) GI:14573456
          Length = 628

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 161 LARQPRFQLALLWAVRSQYAYGSAYGIYIL 250
           L  +P  QL L W++R Q A GSA G+  L
Sbjct: 391 LRERPPSQLPLAWSIRQQIALGSARGLSYL 420


>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
           domains; weak similarity to HPSR2 - heavy chain
           potential motor protein (GI:871048) [Giardia
           intestinalis]
          Length = 702

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 159 LHLQQALFLLDSQQIQCTRFRWPY 88
           L LQ A+ LLDS  ++ TRF W Y
Sbjct: 635 LQLQNAVKLLDSGAVRATRFLWRY 658


>At1g27260.1 68414.m03321 paired amphipathic helix repeat-containing
           protein low similarity to transcriptional repressor
           SIN3B [Mus musculus] GI:2921547; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 222

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 478 LNDXEDLSVAFNKLRDPATLPYILTQTE-SKYLKLAVPIELTLRDSRDYVPEVKRA 314
           + D  DL + FN L  PA     +T       +  +VP E T+ D+  Y+  VKRA
Sbjct: 50  IKDHLDLLLGFNALL-PARFQIPITPAGFQNVVGRSVPPETTIEDATSYLNSVKRA 104


>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 376 AVPIELTLRDSRDYVPEVKRA 314
           +VP+E TL D+R Y+  VK A
Sbjct: 167 SVPLEKTLDDARSYIDSVKEA 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,020,097
Number of Sequences: 28952
Number of extensions: 209047
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)