Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0198.Seq
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    26   2.8  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   3.7  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   4.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   4.9  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = -1

Query: 346 WPWVE---RLYLLRCVNDRKFVEKKS 278
           W W E   R YL+RCV  R++V  ++
Sbjct: 353 WDWAESVLRQYLIRCVTLRRWVPSRN 378


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 302 IVDTPQEVQPLDPRPDHVVQHSRPVTAE 385
           + DTP+ + PL P P   +  S+ VT E
Sbjct: 162 LADTPRGLVPLLPPPSSSIPRSKAVTIE 189


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 87  LEYECRNWTCYCV 49
           LEYEC+N++C  V
Sbjct: 141 LEYECKNYSCIAV 153


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 361 LDYMVWPWVERLYLLR-CVNDRKFVEKKSLFPNFADWVIKCN*MISLRSTRIRLKSISIT 185
           LD++ +  +   YL + C  D   + K + F N  ++ +KC  + S  + R R     +T
Sbjct: 787 LDWVGYYHLRMAYLEKFCFKDST-IPKSNDFSNITEYYVKCAMLESFPNIRDRK---GVT 842

Query: 184 TKTLERILWAIIC 146
             +++++L  ++C
Sbjct: 843 PSSVKKLLLDLLC 855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,069
Number of Sequences: 5004
Number of extensions: 39180
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)