Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0198.Seq
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0112 + 16781770-16782020,16782032-16782764 30 0.93
03_02_0188 + 6251256-6251561 28 3.7
05_04_0304 - 20048518-20049003,20049074-20049412 28 5.0
04_04_1484 + 33911301-33911792 28 5.0
01_01_0914 - 7208910-7209449,7209488-7209919 28 5.0
07_03_0576 + 19638725-19638779,19638988-19639144,19639871-196401... 27 6.5
11_01_0037 - 280749-281196,281418-281568,281684-281720,281831-28... 27 8.7
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 27 8.7
>06_03_0112 + 16781770-16782020,16782032-16782764
Length = 327
Score = 30.3 bits (65), Expect = 0.93
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 236 DDIVKKHAHSPQEYFDYYKNARAHSMGYYL*IRTINPVGSSLVLAT 99
DD+ +H H+P Y D+Y H+ G +RTI + + +V AT
Sbjct: 66 DDLQDEHTHNPFPY-DHYARWGRHTYGKVAGLRTIPNMVNRIVRAT 110
>03_02_0188 + 6251256-6251561
Length = 101
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 27 SGSRAIQPHNNKSSFDIHILSKRFRGQDERGPHRI 131
+G A++ + N++ F+I ++S +F GQ HR+
Sbjct: 39 AGHAAVKDNANETHFNIRVISPKFEGQSLVKRHRM 73
>05_04_0304 - 20048518-20049003,20049074-20049412
Length = 274
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -1
Query: 445 QIIQTLEIFEKELTN---RGTNYFGGNRPGMLDYMVWPWVERLYLLRCVNDRKFVEKKSL 275
Q+ L + E EL +G +FGG++ G+LD ++ L + V + V+ +
Sbjct: 135 QVHDNLALLEAELREGAFKGRRFFGGDQVGLLDVVLGCGSYWLAVFEEVTGVRLVDADA- 193
Query: 274 FPNFADWV 251
FP F W+
Sbjct: 194 FPLFHAWL 201
>04_04_1484 + 33911301-33911792
Length = 163
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 297 FLSLTHLRRYSLSTQGQTM*SSIPGRLPPK*FVPLLVNSFSKI 425
F+ + HLR Y LS + S+ +LPP+ PLL + + I
Sbjct: 102 FMVICHLRDYGLSVPKMSDFSNQEHQLPPRGPRPLLTDGYRSI 144
>01_01_0914 - 7208910-7209449,7209488-7209919
Length = 323
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -1
Query: 193 SITTKTLERILWA-IICRFE 137
SIT +T++R +W I+CRFE
Sbjct: 100 SITARTIQRFVWRNIMCRFE 119
>07_03_0576 +
19638725-19638779,19638988-19639144,19639871-19640113,
19640267-19640801,19640897-19641054,19641194-19641626
Length = 526
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 239 LDDIVKKHAHSPQEYFDYYKNARAHSM 159
+DD +K AH P+ +F YY+++ H +
Sbjct: 250 VDDNPEK-AHDPETFFKYYRHSNCHRL 275
>11_01_0037 -
280749-281196,281418-281568,281684-281720,281831-281907,
282130-282382
Length = 321
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 314 PQEVQPLDPRPD-HVVQHSRPVTAEVICTSVS 406
P VQ PD +++ H RPV E+IC+ S
Sbjct: 230 PDFVQGSSSSPDDNIMNHQRPVLKEMICSEGS 261
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -1
Query: 337 VERLYLLRCVNDRKFVEKKSLF-PNFADWVI-KC 242
+ RL+LL C R + + LF P+FADWV+ KC
Sbjct: 1440 LNRLFLLIC---RPLNDIEDLFYPSFADWVVLKC 1470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,106,190
Number of Sequences: 37544
Number of extensions: 267031
Number of successful extensions: 666
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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