Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0198.Seq
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical ...    40   0.001
Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical pr...    33   0.16 
L16622-2|ABB51199.1|  246|Caenorhabditis elegans Hypothetical pr...    30   0.84 
L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical pr...    30   0.84 
L16622-3|ABC71837.1|  254|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    29   2.6  
Z75550-3|CAA99929.1|  167|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z92834-6|CAB07391.1|  312|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical pr...    28   4.5  
L23651-11|AAA27959.1|  250|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical
           protein K10F12.4a protein.
          Length = 309

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -1

Query: 388 YFGGNRPGMLDYMVWPWVERLYLLRCVNDRKF 293
           ++GG +PG  DY++WP++ERL LL    + +F
Sbjct: 236 FYGGRQPGYADYLMWPFLERLQLLTMSPNSQF 267


>Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical
           protein F13A7.10 protein.
          Length = 254

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 466 ELRFRK*QIIQTLEIFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLYLL 317
           EL+ +   I++  E  E E    G  Y G + PG +DY+++P  +R+Y L
Sbjct: 144 ELKEKFESILKAFE--EAESLLEGAFYSGTSSPGFVDYLIYPSFQRVYWL 191


>L16622-2|ABB51199.1|  246|Caenorhabditis elegans Hypothetical
           protein C02D5.3b protein.
          Length = 246

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 397 GTNYFGGNRPGMLDYMVWPWVERLY 323
           G  Y G ++PG +DY+++P ++R Y
Sbjct: 157 GDFYSGTSKPGFVDYLLYPNIQRAY 181


>L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical
           protein C02D5.3a protein.
          Length = 537

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 397 GTNYFGGNRPGMLDYMVWPWVERLY 323
           G  Y G ++PG +DY+++P ++R Y
Sbjct: 157 GDFYSGTSKPGFVDYLLYPNIQRAY 181



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = -1

Query: 445 QIIQTLEIFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLY 323
           ++ +  +  E+ LT  G  Y G ++PG +DY+++P ++R +
Sbjct: 434 ELAKAYDTAEELLT--GDFYSGTSKPGFVDYLIYPNIQRAF 472


>L16622-3|ABC71837.1|  254|Caenorhabditis elegans Hypothetical
           protein C02D5.3c protein.
          Length = 254

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = -1

Query: 445 QIIQTLEIFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLY 323
           ++ +  +  E+ LT  G  Y G ++PG +DY+++P ++R +
Sbjct: 151 ELAKAYDTAEELLT--GDFYSGTSKPGFVDYLIYPNIQRAF 189


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 129  SGGVLSRPGHGNAYLEYECRNWTCYCVAVW 40
            + GV   P HG  YLEY+CR   C  +AV+
Sbjct: 3669 TSGVQVCPRHGVEYLEYKCR--FCCSIAVY 3696


>Z75550-3|CAA99929.1|  167|Caenorhabditis elegans Hypothetical
           protein T22C1.5 protein.
          Length = 167

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 314 PQEVQPLDPRPDHVVQHSRPVTAEVI-CTSVSQF 412
           P     LDP  D   +H +P+  +V+ CT+ S F
Sbjct: 26  PPSSNELDPYEDGTFEHKKPIPEKVVQCTNFSYF 59


>Z92834-6|CAB07391.1|  312|Caenorhabditis elegans Hypothetical
           protein F39B2.11 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 406 TNRGTN-YFGGNRPGMLDYMVWPWVERLYLLRCVNDRKFVEKKSLFPNFADWV 251
           T  G N +F GN+P  LD +V+ ++  L  +   NDR  V+  S  PN   +V
Sbjct: 172 TKLGDNKFFCGNKPTSLDALVFGYLAPLLRVPLPNDRLQVQ-LSACPNLVRFV 223


>Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical
           protein R08D7.4 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 505 TKLIKGSLECFRHELRFRK*QIIQTLEIFEKELTNRGTNYF 383
           T+  + S+ECF H L+  K +I++  E +E      G N +
Sbjct: 303 TRRNESSIECFEHHLKMAKLEIVEKFE-YENGAYTIGENSY 342


>L23651-11|AAA27959.1|  250|Caenorhabditis elegans Hypothetical
           protein C29E4.7 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = -1

Query: 445 QIIQTLEIFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLY 323
           ++ + L+  E  L N   +++ G++PG  DY+ +P+ E+++
Sbjct: 146 KVFEVLKQAENLLAN---DFYAGSQPGYPDYLSFPFFEKIW 183


>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical protein
            T07D4.3 protein.
          Length = 1301

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 140  RTINPVGSSLVLATETLT*NMNVETGLVIVWL 45
            R +  VG  LV   ET+T  MNV T   ++ L
Sbjct: 1088 RKVECVGEGLVRIDETITIRMNVSTAAALIGL 1119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,886,860
Number of Sequences: 27780
Number of extensions: 217435
Number of successful extensions: 559
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)