Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0198.Seq
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13030.1 68416.m01623 hAT dimerisation domain-containing prot...    31   0.34 
At1g77290.1 68414.m09001 tetrachloro-p-hydroquinone reductive de...    30   0.78 
At1g53680.1 68414.m06108 glutathione S-transferase, putative sim...    30   1.0  
At2g29440.1 68415.m03577 glutathione S-transferase, putative           29   2.4  
At2g29450.1 68415.m03578 glutathione S-transferase (103-1A) iden...    28   3.1  
At1g27140.1 68414.m03307 glutathione S-transferase, putative sim...    28   4.2  
At5g17620.1 68418.m02066 expressed protein                             27   5.5  
At1g69920.1 68414.m08046 glutathione S-transferase, putative sim...    27   7.3  

>At3g13030.1 68416.m01623 hAT dimerisation domain-containing protein
           contains Pfam profile: PF04937 domain of unknown
           function (DUF659), weak hit to PF05699 hAT family
           dimerisation domain
          Length = 544

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 239 LDDIVKKHAHSPQEYFDYYKNARA-HSMGYYL*IRTINPVGSSLVLATE 96
           +DD+  KH H+P     Y+ N  A +S  ++L I  +  + SSL+   E
Sbjct: 376 IDDVWNKHLHNPLHAAGYFLNPTAFYSTNFHLDIEVVTGLISSLIHMVE 424


>At1g77290.1 68414.m09001 tetrachloro-p-hydroquinone reductive
           dehalogenase-related contains similarity to
           tetrachloro-p-hydroquinone reductive dehalogenase
           GI:148689 from [Flavobacterium sp.]
          Length = 266

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = -1

Query: 463 LRFRK*QIIQTLEIFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLYLL 317
           LR  K  +++ L+  E +L   GT Y  GN   M D M+ P + RL LL
Sbjct: 161 LRRSKDHLLRLLDEVETKL--EGTTYLAGNEFSMADVMLIPVLARLSLL 207


>At1g53680.1 68414.m06108 glutathione S-transferase, putative
           similar to GI:2853219 from [Carica papaya]
          Length = 224

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -1

Query: 451 K*QIIQTLEIFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLYLLRCVNDRKFVEKKSLF 272
           K + +++L++ E EL ++  +YFGG   G +D  + P+    Y L    D   VE +   
Sbjct: 130 KKEFLESLKVLEAELGDK--SYFGGETFGYVDITLVPFYSWFYALEKCGDFS-VEAEC-- 184

Query: 271 PNFADWVIKC 242
           P    W  +C
Sbjct: 185 PKIVAWGKRC 194


>At2g29440.1 68415.m03577 glutathione S-transferase, putative
          Length = 223

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = -1

Query: 442 IIQTLEIF---EKELTNRGTNYFGGNRPGMLDYMVWPWV----ERLYLLRCVNDRKFVEK 284
           I QT E+    EKEL   G +YFGG   G LD++    +    ER +    +      EK
Sbjct: 126 IEQTRELIMCLEKELA--GKDYFGGKTVGFLDFVAGSMIPFCLERAW--EGMGVEMITEK 181

Query: 283 KSLFPNFADWVIK 245
           K  FP +  WV K
Sbjct: 182 K--FPEYNKWVKK 192


>At2g29450.1 68415.m03578 glutathione S-transferase (103-1A)
           identical to Swiss-Prot:P46421 glutathione S-transferase
           103-1A [Arabidopsis thaliana]
          Length = 224

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -1

Query: 445 QIIQTLEIFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLYLLRCVNDRKFVEKKSLFPN 266
           Q+ + +   EKEL   G +YFGG   G LD++    +              V  +  FP 
Sbjct: 129 QVRELIMYLEKELV--GKDYFGGKTVGFLDFVAGSLIPFCLERGWEGIGLEVITEEKFPE 186

Query: 265 FADWV 251
           F  WV
Sbjct: 187 FKRWV 191


>At1g27140.1 68414.m03307 glutathione S-transferase, putative
           similar to glutathione S-transferase GB: AAF22517
           GI:6652870 from [Papaver somniferum] GB:AY050343.
          Length = 243

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = -1

Query: 427 EIFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLYLLRCVNDRKFVEKKSLFPNFADWVI 248
           E F+K  +++G  +FGG   G LD      +  + ++   +  KFV +++  P    W +
Sbjct: 143 ETFQK--SSKGLGFFGGETIGYLDIACAALLGPISVIEMFSADKFVREETT-PGLIQWAV 199

Query: 247 K 245
           +
Sbjct: 200 R 200


>At5g17620.1 68418.m02066 expressed protein
          Length = 329

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 248 QMQLDDIVKKHAHSP-QEYFDYYKNARAHSMGYYL*IRTINPV 123
           Q ++DD+  KHA++P +EY +     RA    +    R  N +
Sbjct: 188 QQKVDDLAAKHAYNPDEEYTEVESQLRARLESFLETARAFNTI 230


>At1g69920.1 68414.m08046 glutathione S-transferase, putative
           similar to glutathione transferase GB:CAA09188
           [Alopecurus myosuroides]; supported by cDNA gi:15451157
           gb:AY050343.
          Length = 254

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 427 EIFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLYLLRCVNDRKFVEKKSLFPNFADWVI 248
           E F+K  +++G ++FGG   G +D  V   V  + ++   +  KF+ +    P    W  
Sbjct: 170 EAFQK--SSKGGDFFGGGNIGFVDITVGAIVGPISVIEAFSGVKFL-RPDTTPGLIQWAE 226

Query: 247 K 245
           K
Sbjct: 227 K 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,428,297
Number of Sequences: 28952
Number of extensions: 209018
Number of successful extensions: 492
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)