Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0197.Seq
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             113   9e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          100   9e-22
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 78   4e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   0.64 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.5  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.5  
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   4.5  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)                       28   4.5  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   5.9  
SB_19913| Best HMM Match : zf-C2H2 (HMM E-Value=8.9e-08)               27   7.9  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  113 bits (272), Expect = 9e-26
 Identities = 54/95 (56%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = +2

Query: 5   IDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNGQ 184
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 185 TREHALLAFTLGVKQLIVGVNK--MVPLNHHTVSP 283
           TREHA+L  +LGV QLIV +NK  MV L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  100 bits (239), Expect = 9e-22
 Identities = 43/84 (51%), Positives = 61/84 (72%)
 Frame = +2

Query: 2   TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 182 QTREHALLAFTLGVKQLIVGVNKM 253
           QTREHA+LA T GVK L++ VNKM
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKM 292



 Score = 33.9 bits (74), Expect = 0.091
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +1

Query: 271 YSEPRFEEIKKEVSSYIKKIGYNP 342
           ++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = +2

Query: 2   TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 112
           TIDI LWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 35.9 bits (79), Expect = 0.022
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = +1

Query: 385 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIESSRCHPATCPPLTXPCVFPCXTY 546
           NM+  +++MPWFK W +ER      KE  A G  L E          P   P   P    
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 547 XKIG 558
            KIG
Sbjct: 113 YKIG 116


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 47  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 151
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +2

Query: 56  IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVKQLI 235
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 236 VGVNKM 253
           +  NK+
Sbjct: 123 ILQNKI 128


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 53  IIDAPGHRDFIKNMITGTSQADCAVLIV 136
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 47  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 151
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 211 HPRCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 339
           H   + + RR ++N   +   + P+FE++K + +S  KKI  N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 373 WHGDNMLEPSTKMPWFKGWQVERKE 447
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 41  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 151
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 256  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 396
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
          Length = 125

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +1

Query: 181 SNP*ACLARFHPRC-----QTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 339
           +N  A L RF   C     ++A RR ++N   +   + P+F+ +K + S   KKI  N
Sbjct: 25  NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 429 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 319
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 211 HPRCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 339
           H   ++A RR ++N   +   + P+F+ +K + S   KKI  N
Sbjct: 8   HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 2   TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 142
           T  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_19913| Best HMM Match : zf-C2H2 (HMM E-Value=8.9e-08)
          Length = 532

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = +1

Query: 232 HRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHG---DNML--E 396
           H +  +    E PY+  R  +  +   S I   GY   A   +P   W G    NM+  E
Sbjct: 83  HEKPAEPAKPEVPYALRRIPDEVRLCKSNIPGAGYGIQANTVIPAGAWIGPYEGNMVKAE 142

Query: 397 PSTKMPWFKGWQVERKEGKADG 462
            + K   F  W++  K+G+  G
Sbjct: 143 DAPKEKNFYMWEI-FKDGRLYG 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,638,466
Number of Sequences: 59808
Number of extensions: 373705
Number of successful extensions: 1316
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)