Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0197.Seq
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 173 9e-44
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 160 5e-40
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 160 5e-40
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 126 1e-29
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 112 2e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 112 2e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 102 2e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 67 7e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 67 7e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 65 3e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 65 3e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 65 3e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.006
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.11
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.24
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.43
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.74
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 30 0.98
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 0.98
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 0.98
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.3
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 1.7
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 1.7
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 1.7
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 1.7
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,... 27 9.1
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 173 bits (420), Expect = 9e-44
Identities = 99/161 (61%), Positives = 106/161 (65%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
TIDI LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGI KNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 182 QTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSC 361
QTREHALLA TLGVKQL V L T SPD +SRR T Q L
Sbjct: 132 QTREHALLAQTLGVKQL-------VSLRSPTRSPD----------SSRRSDTIQRLFHLS 174
Query: 362 PFLDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASLKAL 484
D TETTC C GSRDG + +K L E S + L
Sbjct: 175 QSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLL 215
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 160 bits (389), Expect = 5e-40
Identities = 75/84 (89%), Positives = 78/84 (92%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
TIDI LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGI KNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 182 QTREHALLAFTLGVKQLIVGVNKM 253
QTREHALLA TLGVKQLIV NKM
Sbjct: 132 QTREHALLAQTLGVKQLIVACNKM 155
Score = 126 bits (303), Expect = 1e-29
Identities = 61/101 (60%), Positives = 68/101 (67%)
Frame = +1
Query: 256 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQV 435
STEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW V
Sbjct: 157 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAV 216
Query: 436 ERKEGKADGKCLIESSRCHPATCPPLTXPCVFPCXTYXKIG 558
ERKEG A GK L+E+ P P P KIG
Sbjct: 217 ERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIG 257
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 160 bits (389), Expect = 5e-40
Identities = 75/84 (89%), Positives = 78/84 (92%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
TIDI LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGI KNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 182 QTREHALLAFTLGVKQLIVGVNKM 253
QTREHALLA TLGVKQLIV NKM
Sbjct: 132 QTREHALLAQTLGVKQLIVACNKM 155
Score = 126 bits (303), Expect = 1e-29
Identities = 61/101 (60%), Positives = 68/101 (67%)
Frame = +1
Query: 256 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQV 435
STEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW V
Sbjct: 157 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAV 216
Query: 436 ERKEGKADGKCLIESSRCHPATCPPLTXPCVFPCXTYXKIG 558
ERKEG A GK L+E+ P P P KIG
Sbjct: 217 ERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIG 257
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 126 bits (303), Expect = 1e-29
Identities = 61/101 (60%), Positives = 68/101 (67%)
Frame = +1
Query: 256 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQV 435
STEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW V
Sbjct: 123 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAV 182
Query: 436 ERKEGKADGKCLIESSRCHPATCPPLTXPCVFPCXTYXKIG 558
ERKEG A GK L+E+ P P P KIG
Sbjct: 183 ERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIG 223
Score = 96.3 bits (229), Expect = 1e-20
Identities = 42/46 (91%), Positives = 45/46 (97%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 139
TIDI LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 112 bits (269), Expect = 2e-25
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G G
Sbjct: 235 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 294
Query: 182 QTREHALLAFTLGVKQLIVGVNKM 253
QT+EHALL +LGV QLIV VNK+
Sbjct: 295 QTKEHALLLRSLGVTQLIVAVNKL 318
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +1
Query: 271 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 426
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 323 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWYDG 372
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 112 bits (269), Expect = 2e-25
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G G
Sbjct: 253 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 312
Query: 182 QTREHALLAFTLGVKQLIVGVNKM 253
QT+EHALL +LGV QLIV VNK+
Sbjct: 313 QTKEHALLLRSLGVTQLIVAVNKL 336
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +1
Query: 271 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 426
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 341 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWYDG 390
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 102 bits (245), Expect = 2e-22
Identities = 45/84 (53%), Positives = 61/84 (72%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + G
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233
Query: 182 QTREHALLAFTLGVKQLIVGVNKM 253
QTREH++L T GVK L++ VNKM
Sbjct: 234 QTREHSMLVKTAGVKHLVILVNKM 257
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +1
Query: 271 YSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPST--KMPWFKG 426
+ E RF+EI+ +++ +++K+G+NP + +VP SG G + + T + W+ G
Sbjct: 264 WEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEGNWYSG 318
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 67.3 bits (157), Expect = 7e-12
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
TI++ +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147
Query: 182 QTREHALLAFTLGVKQLIVGVNK 250
QT+EH +LA +GVK + + +NK
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINK 170
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 67.3 bits (157), Expect = 7e-12
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
TI++ +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147
Query: 182 QTREHALLAFTLGVKQLIVGVNK 250
QT+EH +LA +GVK + + +NK
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINK 170
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 65.3 bits (152), Expect = 3e-11
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 151
Query: 182 QTREHALLAFTLGV--KQLIVGVNKM 253
QTREH LLA +GV ++V +NK+
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKV 177
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 65.3 bits (152), Expect = 3e-11
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 152
Query: 182 QTREHALLAFTLGV--KQLIVGVNKM 253
QTREH LLA +GV ++V +NK+
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKV 178
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 65.3 bits (152), Expect = 3e-11
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNG 181
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 152
Query: 182 QTREHALLAFTLGV--KQLIVGVNKM 253
QTREH LLA +GV ++V +NK+
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKV 178
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/86 (29%), Positives = 43/86 (50%)
Frame = +2
Query: 47 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVK 226
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGI--QPQTAEHLLLASKFCPN 126
Query: 227 QLIVGVNKMVPLNHHTVSPDLRKSRR 304
++I+ +NK +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.5 bits (83), Expect = 0.006
Identities = 27/69 (39%), Positives = 32/69 (46%)
Frame = +2
Query: 47 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGVK 226
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 227 QLIVGVNKM 253
QL+V VNK+
Sbjct: 258 QLVVAVNKI 266
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 249 LFTPTMSCLTPRVKASKACSRV*PFLXIPASNSPVPAATMSTA 121
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.24
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +2
Query: 41 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLG 220
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 221 VKQLIVGVNKM 253
+ Q+I +NK+
Sbjct: 155 I-QIIPVINKI 164
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 31.5 bits (68), Expect = 0.43
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 44 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIXKNGQTREHALLAFTLGV 223
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 224 KQLIVGVNKM 253
L++ NK+
Sbjct: 182 NHLMILQNKV 191
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 151
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 2 TIDIXLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 151
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 32 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 151
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 32 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 151
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 53 IIDAPGHRDFIKNMITGTSQADCAVLIV 136
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 311 PHTSRRLATTQLLSLSCPFLD 373
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 311 PHTSRRLATTQLLSLSCPFLD 373
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 311 PHTSRRLATTQLLSLSCPFLD 373
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 311 PHTSRRLATTQLLSLSCPFLD 373
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 47 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 142
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 47 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 136
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 47 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 136
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,
light intermediateprotein 1 protein.
Length = 643
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +1
Query: 217 RCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAF----VPISGWHGD 384
R Q R + +NG+T+ S EV ++++G + P G H D
Sbjct: 30 RVQNLLRSTNENGTTQNGTSRQTLSS--NEVEDILRQVGISTEPTVREESPAPPPGSHSD 87
Query: 385 NMLEPSTKMP 414
N ++PS P
Sbjct: 88 NHVDPSASHP 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,620
Number of Sequences: 27780
Number of extensions: 275628
Number of successful extensions: 1003
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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