Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0196.Seq
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   3.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   3.1  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 213 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 112
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 509 KGIRIRSQKRYRQSSTTDKRAPTVPAAPIPPQARPGQAQPLQAVLLP 369
           + I   SQK  + S  T    P  PAAP+ P+A P   QP  A + P
Sbjct: 495 RDISSASQKAAQPSVITPS-VPQPPAAPVVPEA-PSVHQPPAAPVAP 539


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 470 SSTTDKRAPTVPAAPIPPQA 411
           +STT    P+ PA P+PP +
Sbjct: 122 TSTTSASPPSAPAPPLPPSS 141


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 446 PTVPAAPIPPQA-RPGQAQPLQAVL-LPRR 363
           P  PAAP PP A  P  A P+ ++  LP++
Sbjct: 468 PLPPAAPAPPPAPAPAPAAPVASIAELPQQ 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,885
Number of Sequences: 5004
Number of extensions: 40907
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)