Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0196.Seq
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 31 0.44
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 31 0.77
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238 30 1.0
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 30 1.3
06_03_0219 - 18227559-18227858,18227864-18228340 29 3.1
04_03_0060 - 10511421-10512494 28 4.1
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 28 5.4
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 28 5.4
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 27 7.2
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 9.5
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 27 9.5
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 499 GSGHKSATDSHPQPISEHRQCQQHRFHLKHVRGKHNHFRQFFYL 368
G K SH RQ QQ + +H+R +H+H R +FYL
Sbjct: 151 GLSWKGRAASHES--QRRRQQQQQQLKGRHLRPRHSHRRGYFYL 192
>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
Length = 380
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 479 YRQSSTTDKRAPTVPAAPIPPQARPGQAQPLQ 384
Y + DK T+P AP PPQ PG+A P +
Sbjct: 139 YPPTVPIDKAKATLPPAPFPPQ-HPGRADPAE 169
>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
Length = 490
Score = 30.3 bits (65), Expect = 1.0
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = -3
Query: 509 KGIRIRSQKRYRQSSTTDKRAPTVPAAPIPPQARPGQAQPLQAVLLPRRFKYIGRFLHFV 330
+GI + +SST + AP+ PAA +A P A P + L R + + F+
Sbjct: 116 EGIPVPEAASSDESSTPAEAAPSDPAADAAAEAAP--APPRRPAELLRAYTVEIACVSFL 173
Query: 329 *CFQESSF---RREQTFTQAWSRKNMPLFENIFDIPYHL 222
CF + F R+ + AW+ + ++IFD + L
Sbjct: 174 ICFLLNYFTGKRQNEAIALAWATR-FATRDSIFDKNFSL 211
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 467 STTDKRAPTVPAAPIPPQARPGQAQPLQ 384
ST+ AP +P++ PP A P + PLQ
Sbjct: 315 STSQANAPPIPSSEPPPSALPNNSFPLQ 342
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 437 PAAPIPPQARPGQAQPLQAVLLPRR 363
PAAP PP A P P A+ PRR
Sbjct: 89 PAAPSPPPASPPPPPPRLALRFPRR 113
>04_03_0060 - 10511421-10512494
Length = 357
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 488 QKRYRQSSTTDKRAPTVPAAPIPPQARPG 402
++R R ++ +++RAP +PAA PP G
Sbjct: 156 ERRLRAAAISERRAPPLPAAGPPPTPAAG 184
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -1
Query: 535 SEAVSGGXIKESGSGHKSATDS-HPQPISEHRQCQQHRFHLKHVRGKHNHFRQ 380
S+++S + G++ +D+ HP P +H+Q QQH ++ ++ +H H +Q
Sbjct: 121 SDSLSFPSSSQVSLGNQLGSDNLHPPP--QHQQQQQHLDAMQDLQHQHQHQQQ 171
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -3
Query: 449 APTVPAAPIPPQARPGQAQPLQAVLLP 369
AP PAAP ARP QP AV P
Sbjct: 80 APPPPAAPAVTPARPPPQQPAVAVAAP 106
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = -3
Query: 452 RAPTVPA---APIPPQARPGQAQPLQAV 378
RAP VPA AP PP PG Q Q V
Sbjct: 165 RAPLVPAPPPAPFPPVPTPGMTQAPQMV 192
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -3
Query: 494 RSQKRYRQSSTTDKRAPTVPAAPIPPQARPGQAQPLQAVLLPRR 363
RS R R SS + +P P P RP + + PRR
Sbjct: 161 RSMSRTRPSSAASRSSPPFALQPPTPSWRPSTPPSAKTLTPPRR 204
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 503 IRIRSQKRYRQSST-TDKRAPTVPAAPIPPQARPGQAQPLQAVLLP 369
+R+ S + R SS D+R+P +P P PP R + PL ++ P
Sbjct: 227 LRVCSTEMGRTSSLYLDRRSPPLPPRPPPPPVRVA-SPPLYTLVPP 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,550,424
Number of Sequences: 37544
Number of extensions: 261263
Number of successful extensions: 934
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -