Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0196.Seq
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26) 28 4.2
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34) 28 4.2
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 28 4.2
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 5.6
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5) 28 5.6
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 27 7.3
SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8) 27 9.7
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 527 GFWWXNKGIRIRSQKRYRQSSTTDKRAPTVPAAPIPPQARP 405
G+ W N+G R R + RYR+ +R P P P PP P
Sbjct: 843 GYRW-NRG-RGRGRSRYRRPRPRPRRPPPPPPPPPPPPPPP 881
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -2
Query: 306 QA*TDFYTSLVKEKYAFVRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 163
Q+ +Y VKEK H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 473 QSSTTDKRAPTVPAAPIPPQARPGQAQPLQ 384
+S +T +P+VP P PP +PG A ++
Sbjct: 2309 RSPSTGSHSPSVPPPPPPPPEQPGDAMDIE 2338
>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 521 WWXNKGIRIRSQKRYRQSSTTDKRAPTVPAAPIPPQARPGQAQPLQAV 378
W G++ S ++ Q +T ++ +P A IPPQ+ PG P Q++
Sbjct: 1026 WQVADGMQYLSSQKSIQCATLPPQS--IPGASIPPQSIPGAFLPPQSI 1071
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 443 TVPAAPIPPQARP--GQAQPLQAVLLPRRFKYIG 348
T+P+ P+PP+A G++QP L P+ K +G
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLG 1040
>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
Length = 589
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 538 SSEAVSGGXIKESGSGHKSATDSHPQPISEHRQCQQHRFHLKHVRGKHNHFRQ 380
SS + S S +G + T S P S H + R H ++ R H+H Q
Sbjct: 471 SSSSSSSSSSSSSSTGAQLLTPSKPS--SNHNHYHRRRHHHRNYRHNHHHRHQ 521
>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
Length = 674
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -3
Query: 512 NKGIRIRSQKRYRQSSTTDKRAPTVPAAPIPPQARPGQAQPLQAVLLPR 366
N IR +R+RQ+ +T PT P P P RP A V+ PR
Sbjct: 234 NVFIRYDRYERFRQAQSTPS-TPTEPPRPAEP-PRPSPAATAHPVMPPR 280
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -3
Query: 446 PTVPAAPIPPQARPGQAQPLQAVLLPRRFKYIGRFLHFV*CFQE 315
P PA P PP P L+ P R ++ LH C QE
Sbjct: 415 PPPPAPPPPPPPPPPPPPALRLACAPPRLRFTSPVLHLA-CAQE 457
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 467 STTDKRAPTVPAAPIPPQARPGQAQPLQAVLLP 369
ST R TVP P+PP P Q+ P +L+P
Sbjct: 624 STAQPRPTTVP--PLPPTPPPRQSTPPPLLLIP 654
>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
Length = 279
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 484 SATDSHPQPISEHRQCQQHRFHLKHVRGKHNH 389
S++ S P P S Q H H H+ HNH
Sbjct: 115 SSSQSLPPPPSSSSQPSSHHHHHHHLLHNHNH 146
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -1
Query: 490 HKSATDSHPQPISEHRQ-CQQHRFHLKHVRGKHNHFRQ 380
H+ D H Q + HRQ HR + H R H RQ
Sbjct: 630 HRQDVDHHRQDVDHHRQDADHHRQDVVHPRQDVVHRRQ 667
>SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)
Length = 562
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 203 KHRYSYGDGKEYRICFRTKAYFSLTRLV 286
+H +S GD ++ IC +KAY L R V
Sbjct: 432 EHEFSLGDAEKEFICATSKAYEELIRNV 459
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,152
Number of Sequences: 59808
Number of extensions: 308458
Number of successful extensions: 869
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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