Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0196.Seq
         (538 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   3.7  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   3.7  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   8.6  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   8.6  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    23   8.6  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    23   8.6  
AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       23   8.6  
AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    23   8.6  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
            differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 488  QKRYRQSSTTDKRAPTVPAAPIPPQARPGQAQPLQAV 378
            +++ R SS+   R P   AA  PP       QP Q V
Sbjct: 896  EQQQRSSSSQQHRGPGAAAATGPPPPTHRLEQPPQVV 932


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 490  HKSATDSHPQPISEHRQCQQHRFHLKHVRGKHNHFRQFFYLGG 362
            H+   D H      H +     FHL  V   H +FR++ ++ G
Sbjct: 904  HRMIPDLHLWMSRRHGEVD---FHLSQVLTGHGYFREYLHVCG 943


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 424  FHLKHVRGKHNHFRQFFYLGG 362
            FHL  V   H  FR++  + G
Sbjct: 981  FHLAQVLSGHGFFREYLAING 1001


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -1

Query: 496 SGHKSATDSHPQPISEHRQCQQHRFHLKHVRG 401
           S H+  +  HP    +    Q H  H  H  G
Sbjct: 261 SSHQQQSQQHPSSQHQQPTHQTHHHHHHHQHG 292


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -1

Query: 496 SGHKSATDSHPQPISEHRQCQQHRFHLKHVRG 401
           S H+  +  HP    +    Q H  H  H  G
Sbjct: 261 SSHQQQSQQHPSSQHQQPTHQTHHHHHHHQHG 292


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -1

Query: 496 SGHKSATDSHPQPISEHRQCQQHRFHLKHVRG 401
           S H+  +  HP    +    Q H  H  H  G
Sbjct: 213 SSHQQQSQQHPSSQHQQPTHQTHHHHHHHQHG 244


>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 256 KGIFFLDQACVKVCSRLNDDSWKH*TK 336
           +GI+  +   VK+    ++DSWK  T+
Sbjct: 167 RGIWHGESVAVKIFFSRDEDSWKRETE 193


>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
           protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 502 SGSGHKSATDSHPQPISEHRQC 437
           S   H+ A D H  P +  R+C
Sbjct: 233 SSKCHRCAEDKHEGPCTRERKC 254


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,191
Number of Sequences: 2352
Number of extensions: 10627
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49897362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)