Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0196.Seq
(538 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat... 33 0.85
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ... 32 1.5
AK126463-1|BAC86558.1| 559|Homo sapiens protein ( Homo sapiens ... 32 1.5
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein. 32 1.5
BC126910-1|AAI26911.2| 1768|Homo sapiens TNS1 protein protein. 30 4.5
BC116188-1|AAI16189.1| 1713|Homo sapiens TNS1 protein protein. 30 4.5
BC116187-1|AAI16188.1| 1721|Homo sapiens TNS1 protein protein. 30 4.5
BC014042-1|AAH14042.1| 438|Homo sapiens TNS1 protein protein. 30 4.5
AF225896-1|AAG33700.1| 1735|Homo sapiens tensin protein. 30 4.5
AC009469-1|AAX88952.1| 1735|Homo sapiens unknown protein. 30 4.5
AB209238-1|BAD92475.1| 873|Homo sapiens tensin variant protein. 30 4.5
>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
SRCAP protein.
Length = 2971
Score = 32.7 bits (71), Expect = 0.85
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 470 SSTTDKRAPTVPAAPIPPQARPGQAQPLQAVL 375
+S T AP VPAAP PP +P A P + L
Sbjct: 1215 TSVTPPLAPVVPAAPGPPSLQPSGASPSASAL 1246
>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
FLJ46149 fis, clone TESTI4000621, moderately similar to
Homo sapiens Snf2-related CBP activator protein (SRCAP).
).
Length = 2427
Score = 31.9 bits (69), Expect = 1.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 470 SSTTDKRAPTVPAAPIPPQARPGQAQPLQAVL 375
+S T AP VPAAP PP P A P + L
Sbjct: 1474 TSVTPPLAPVVPAAPGPPSLAPSGASPSASAL 1505
>AK126463-1|BAC86558.1| 559|Homo sapiens protein ( Homo sapiens
cDNA FLJ44499 fis, clone UTERU3000665, highly similar
to Homo sapiens Snf2-related CBP activator protein
(SRCAP). ).
Length = 559
Score = 31.9 bits (69), Expect = 1.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 470 SSTTDKRAPTVPAAPIPPQARPGQAQPLQAVL 375
+S T AP VPAAP PP P A P + L
Sbjct: 123 TSVTPPLAPVVPAAPGPPSLAPSGASPSASAL 154
>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
Length = 3053
Score = 31.9 bits (69), Expect = 1.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 470 SSTTDKRAPTVPAAPIPPQARPGQAQPLQAVL 375
+S T AP VPAAP PP P A P + L
Sbjct: 1297 TSVTPPLAPVVPAAPGPPSLAPSGASPSASAL 1328
>BC126910-1|AAI26911.2| 1768|Homo sapiens TNS1 protein protein.
Length = 1768
Score = 30.3 bits (65), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 476 RQSSTTDKRAPTVPAAPIPPQARPGQAQP 390
RQSS + +AP+ P+ P+ P PG + P
Sbjct: 1371 RQSSASGYQAPSTPSFPVSPAYYPGLSSP 1399
>BC116188-1|AAI16189.1| 1713|Homo sapiens TNS1 protein protein.
Length = 1713
Score = 30.3 bits (65), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 476 RQSSTTDKRAPTVPAAPIPPQARPGQAQP 390
RQSS + +AP+ P+ P+ P PG + P
Sbjct: 1316 RQSSASGYQAPSTPSFPVSPAYYPGLSSP 1344
>BC116187-1|AAI16188.1| 1721|Homo sapiens TNS1 protein protein.
Length = 1721
Score = 30.3 bits (65), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 476 RQSSTTDKRAPTVPAAPIPPQARPGQAQP 390
RQSS + +AP+ P+ P+ P PG + P
Sbjct: 1325 RQSSASGYQAPSTPSFPVSPAYYPGLSSP 1353
>BC014042-1|AAH14042.1| 438|Homo sapiens TNS1 protein protein.
Length = 438
Score = 30.3 bits (65), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 476 RQSSTTDKRAPTVPAAPIPPQARPGQAQP 390
RQSS + +AP+ P+ P+ P PG + P
Sbjct: 41 RQSSASGYQAPSTPSFPVSPAYYPGLSSP 69
>AF225896-1|AAG33700.1| 1735|Homo sapiens tensin protein.
Length = 1735
Score = 30.3 bits (65), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 476 RQSSTTDKRAPTVPAAPIPPQARPGQAQP 390
RQSS + +AP+ P+ P+ P PG + P
Sbjct: 1338 RQSSASGYQAPSTPSFPVSPAYYPGLSSP 1366
>AC009469-1|AAX88952.1| 1735|Homo sapiens unknown protein.
Length = 1735
Score = 30.3 bits (65), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 476 RQSSTTDKRAPTVPAAPIPPQARPGQAQP 390
RQSS + +AP+ P+ P+ P PG + P
Sbjct: 1338 RQSSASGYQAPSTPSFPVSPAYYPGLSSP 1366
>AB209238-1|BAD92475.1| 873|Homo sapiens tensin variant protein.
Length = 873
Score = 30.3 bits (65), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 476 RQSSTTDKRAPTVPAAPIPPQARPGQAQP 390
RQSS + +AP+ P+ P+ P PG + P
Sbjct: 476 RQSSASGYQAPSTPSFPVSPAYYPGLSSP 504
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,501,269
Number of Sequences: 237096
Number of extensions: 1409297
Number of successful extensions: 4619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4617
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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