Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0196.Seq
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    31   0.40 
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    29   2.1  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    29   2.1  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    28   3.7  
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr...    27   6.5  
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.      27   6.5  
Z81106-5|CAB03223.3|  432|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL033536-12|CAD45609.2|  432|Caenorhabditis elegans Hypothetical...    27   8.6  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    27   8.6  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   8.6  

>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 381 CLKWLCLPRTCLRWNRCCWHCRCSLIGCG 467
           C +  C  R C     CC  C C   GCG
Sbjct: 103 CCRTCCCTRCCTCCRPCCCGCGCGCCGCG 131


>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 preproprotein
            protein.
          Length = 1042

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 434  AAPIPPQARPGQAQPLQAVLLPRRFKYIGRFLHFV*CFQE--SSFRREQTFT 285
            +API P +  GQ   +     P R   IG+FL  +    E  S F   Q+FT
Sbjct: 900  SAPISPASSSGQLTDVSTATTPLRLNKIGKFLKTLQSDDESPSPFSDHQSFT 951


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y37D8A.13 protein.
          Length = 1042

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 434  AAPIPPQARPGQAQPLQAVLLPRRFKYIGRFLHFV*CFQE--SSFRREQTFT 285
            +API P +  GQ   +     P R   IG+FL  +    E  S F   Q+FT
Sbjct: 900  SAPISPASSSGQLTDVSTATTPLRLNKIGKFLKTLQSDDESPSPFSDHQSFT 951


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 18  YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 110
           ++  + N ITFF  PV   G  C+L K  +R
Sbjct: 15  FLISISNVITFFEIPVCTFGAYCILFKTPER 45


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 446 PTVP-AAPIPPQARPGQAQP 390
           P++P   P+PPQ  PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 455 KRAPTVPAAPIPPQARPGQAQPLQ 384
           ++APT  AAP PP+  P QA P+Q
Sbjct: 316 QQAPT-RAAPAPPKPAPQQAPPVQ 338


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 381 CLKWLCLPRTCLRWNRCCWHCRCSLIGCG 467
           C +  C  R C     CC  C C   GCG
Sbjct: 103 CCRTCCCTRCCTCCRPCCCGCGCG-CGCG 130


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +3

Query: 381 CLKWLCLPRTCLRWNRCCWHCRCSLIGCG 467
           C +  C  R C     CC  C C   GCG
Sbjct: 85  CCRTCCCTRCCTCCRPCCCGCGCG-CGCG 112


>Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical protein
            C52A11.4f protein.
          Length = 2371

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 497  IRSQKRYRQSSTTDKRAPTVPAAPI 423
            +RS K++RQ ST  K++P+   AP+
Sbjct: 1679 VRSIKKHRQESTIIKKSPSNETAPL 1703


>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical protein
            C52A11.4a protein.
          Length = 2393

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 497  IRSQKRYRQSSTTDKRAPTVPAAPI 423
            +RS K++RQ ST  K++P+   AP+
Sbjct: 1701 VRSIKKHRQESTIIKKSPSNETAPL 1725


>Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical protein
            C52A11.4e protein.
          Length = 2184

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 497  IRSQKRYRQSSTTDKRAPTVPAAPI 423
            +RS K++RQ ST  K++P+   AP+
Sbjct: 1492 VRSIKKHRQESTIIKKSPSNETAPL 1516


>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical protein
            C52A11.4d protein.
          Length = 2491

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 497  IRSQKRYRQSSTTDKRAPTVPAAPI 423
            +RS K++RQ ST  K++P+   AP+
Sbjct: 1799 VRSIKKHRQESTIIKKSPSNETAPL 1823


>Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical protein
            C52A11.4f protein.
          Length = 2371

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 497  IRSQKRYRQSSTTDKRAPTVPAAPI 423
            +RS K++RQ ST  K++P+   AP+
Sbjct: 1679 VRSIKKHRQESTIIKKSPSNETAPL 1703


>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical protein
            C52A11.4a protein.
          Length = 2393

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 497  IRSQKRYRQSSTTDKRAPTVPAAPI 423
            +RS K++RQ ST  K++P+   AP+
Sbjct: 1701 VRSIKKHRQESTIIKKSPSNETAPL 1725


>Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical protein
            C52A11.4e protein.
          Length = 2184

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 497  IRSQKRYRQSSTTDKRAPTVPAAPI 423
            +RS K++RQ ST  K++P+   AP+
Sbjct: 1492 VRSIKKHRQESTIIKKSPSNETAPL 1516


>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical protein
            C52A11.4d protein.
          Length = 2491

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 497  IRSQKRYRQSSTTDKRAPTVPAAPI 423
            +RS K++RQ ST  K++P+   AP+
Sbjct: 1799 VRSIKKHRQESTIIKKSPSNETAPL 1823


>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical protein
            C52A11.4c protein.
          Length = 2202

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 497  IRSQKRYRQSSTTDKRAPTVPAAPI 423
            +RS K++RQ ST  K++P+   AP+
Sbjct: 1510 VRSIKKHRQESTIIKKSPSNETAPL 1534


>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
          Length = 2166

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 497  IRSQKRYRQSSTTDKRAPTVPAAPI 423
            +RS K++RQ ST  K++P+   AP+
Sbjct: 1470 VRSIKKHRQESTIIKKSPSNETAPL 1494


>Z81106-5|CAB03223.3|  432|Caenorhabditis elegans Hypothetical
           protein R06C1.6 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 472 SHPQPISEHRQCQQHRFHLKHVRGKHN 392
           S P P+++ +Q QQH   L H+ G H+
Sbjct: 47  STPLPLAKAQQQQQHEQQLHHLPGYHS 73


>AL033536-12|CAD45609.2|  432|Caenorhabditis elegans Hypothetical
           protein R06C1.6 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 472 SHPQPISEHRQCQQHRFHLKHVRGKHN 392
           S P P+++ +Q QQH   L H+ G H+
Sbjct: 47  STPLPLAKAQQQQQHEQQLHHLPGYHS 73


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 174 EYSKSCLVVLNTDILTEMVRNIEYVFEQRHIFP 272
           EY  +C   ++TDI+TE +  + ++ E  H  P
Sbjct: 165 EYKNTCKARMHTDIVTEKI--LTFIHEHNHSAP 195


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 174 EYSKSCLVVLNTDILTEMVRNIEYVFEQRHIFP 272
           EY  +C   ++TDI+TE +  + ++ E  H  P
Sbjct: 165 EYKNTCKARMHTDIVTEKI--LTFIHEHNHSAP 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,868
Number of Sequences: 27780
Number of extensions: 234782
Number of successful extensions: 717
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)