Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0196.Seq
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   4.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +3

Query: 426 RCCWHC 443
           +CCWHC
Sbjct: 604 QCCWHC 609


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 509 KGIRIRSQKRYRQ--SSTTDKRAPTVPAAPIP 420
           K IR RS++  ++  SS  D+R+P+   +P P
Sbjct: 15  KIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSP 46


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 66  VPGRKKM*LCCLDNKRIIKKKK 1
           V GRK   +C LD  ++I+ +K
Sbjct: 76  VDGRKVKSVCTLDGNKLIQVQK 97


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/23 (34%), Positives = 8/23 (34%)
 Frame = -1

Query: 469 HPQPISEHRQCQQHRFHLKHVRG 401
           HP     HR    H  H  H  G
Sbjct: 322 HPSQYHPHRGSSPHHQHGNHTMG 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,172
Number of Sequences: 438
Number of extensions: 2954
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)