Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0196.Seq
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    29   2.6  
At1g13050.1 68414.m01513 expressed protein                             29   2.6  
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    28   3.4  
At4g33140.1 68417.m04721 expressed protein                             28   4.5  
At1g48290.1 68414.m05394 expressed protein ; expression supporte...    28   4.5  
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica...    27   6.0  
At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containi...    27   7.9  

>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 469 HPQPISEHRQCQQHRFHLKHVRGKHNHFRQFF 374
           HP P   H+Q QQH  H  H + +  H + +F
Sbjct: 148 HPHP--HHQQQQQHNHHHHHHQQQQQHQQMYF 177


>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 467 STTDKRAPTVPAAPIPPQARPGQAQPLQ 384
           S + +  P  P  P+PP+  P  A+PLQ
Sbjct: 67  SPSSRPLPLRPEEPLPPRHNPNSARPLQ 94


>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 512 NKGIRIRS-QKRYRQSSTTDKRAPTVPAAPIPPQARPGQAQPLQAVLLPRR 363
           ++ +R R  Q+  ++S T  KR    P +P PP   P   QPL A   PR+
Sbjct: 271 HRSVRNRDLQENAKRSETKFKRTFQPPPSP-PPPPPPPPPQPLIAATPPRK 320


>At4g33140.1 68417.m04721 expressed protein
          Length = 353

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 526 VSGGXIKESGSGHKSATDSHPQPISEHRQCQQHR 425
           V GG  K  G   +S  DSH +P  + R   QHR
Sbjct: 76  VKGGGGKPKGFTLRSCFDSHKKPDQKARALTQHR 109


>At1g48290.1 68414.m05394 expressed protein ; expression supported
           by MPSS
          Length = 444

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 532 EAVSGGXIKESGSGHKSATDSHPQPISEHRQCQQH 428
           EA SG   ++ G G   A  +   P +EHRQC +H
Sbjct: 151 EAHSGPAARDDGDGLVKAIHNRI-PAAEHRQCAKH 184


>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
            domain-containing protein / HNH endonuclease
            domain-containing protein similar to HepA-related protein
            HARP [Homo sapiens] GI:6693791; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain, PF01844: HNH endonuclease
          Length = 1190

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 305  RREQTFTQAWSRKNMPL 255
            R+E+ +TQAWS  N PL
Sbjct: 966  RKEKEYTQAWSMSNEPL 982


>At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1280

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 520  GGXIKESGSGHKSATDSHPQPISEHRQC 437
            GG +KE+    KS  +S  +P SEH  C
Sbjct: 1103 GGLVKEAWHFFKSLKESGAEPKSEHYAC 1130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,023,861
Number of Sequences: 28952
Number of extensions: 211416
Number of successful extensions: 545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)