Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0194.Seq
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.4  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   3.1  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.5  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    21   9.5  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    21   9.5  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 385 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 489
           ++  K NS +NGS D +      ++    + NG+K
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 349 LVTPVTSSNW*NRQLSKDNSASNGSGD 429
           L+   T+S+   R  +  NSASN SGD
Sbjct: 330 LLRHYTASSKNYRSATGGNSASNSSGD 356


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 236 LRNWRRPIP 262
           L NWR P+P
Sbjct: 258 LSNWREPLP 266


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 366 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPA 274
           G  G      HT   K+ G  GSV +R  PA
Sbjct: 236 GNAGTHFWHAHTGLQKMDGLYGSVVIRQPPA 266


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 366 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPA 274
           G  G      HT   K+ G  GSV +R  PA
Sbjct: 236 GNAGTHFWHAHTGLQKMDGLYGSVVIRQPPA 266


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 286 PDCYRTTLAGDLARDGVWLSD 348
           PD  R+  AG    DG  LSD
Sbjct: 418 PDQQRSIFAGKQLEDGRTLSD 438


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 286 PDCYRTTLAGDLARDGVWLSD 348
           PD  R+  AG    DG  LSD
Sbjct: 86  PDQQRSIFAGKQLEDGRTLSD 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,440
Number of Sequences: 336
Number of extensions: 3280
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)